Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1724 ATGATGGAAAGGCCATCACCAGATATTCTGTTCCTCATGATTTCCTATGAAATTTACTCCTTCTCTACTCCATTTCGTGTACCAAGGTCCTCTCCATGGACACGAACCGACATACAGCTGTTAATTTTTCTTCCGTCCTGGCGGAAGATGAGCTTCTTCCCAAGCATCGCTTGCTCATTTGTTGGCGACGAATCTTTTTCGTTGCCAACACCAGCTCAGATGGGTTATAGCCCTCCGGAGGAGCTGTTTGGTCTGGAGGTAGAACTCAACCCAAGGAAAGCTGGCTCTCAAACATCGGAGCCAAGGTCGTGGTTTGGTCCAAATGGACAGTACATCAAAGAATTACCATGTCCAAGCTGCCGGGGAAGAGGTTATACACCTTGTACAGTGTGTGGAATTGAAAGATCAAGATCAGACTGTCCAAGGTGTAACGGAAAGGGTATATTAACTTGCCACCAGTGCTTGGGGGATTGCGTTACTTGGGAAGAATCAATTGATGAACAACCATGGGAAAGAGCTCATTCTATTTCTCCACTCAGGGTGCAGGAAGATGACGAAGTTGACAATTTAGACATAAAGCTGGATGTGAAGAAAAAATCAAAGCGTGTTTACCATTCACCACCTCCTGAAGTTGGTTTAAAGATTAGTCGCTCATTAAAAAGTCTGAATGCAAAAACTGGTCTGTTCAGTAAGAGAATGAAGATCATCCATCGTGATCCCGCACTTCATGCCCAGAGAGTGGCTGCAATCAAGAAATCCAAGGGAACTGTCGCAGCAAGAAAGCATACATCTGAAACTATGAAAGCTTTCTTTAGTGATCCAGAAAACCGCCAGAAAAGGAGCATTGCAATGAAGGGAGTTAAATTCTTCTGCCAAAATTGTGGACGGGAAGGGCACAGAAGACACTACTGTTCAGAACTCAAGGACAGTTTGATCCATCGGCAGTTCAGGTGTCGGGTATGCGGTGAAAAGGGCCATAACAGAAGAACATGCAGCAAGTTGAGGATAAGCCATCGTAAGGGGAAACTTATAAAACATTATCGTTGTAAAATCTGTCGTCAATATGGCCATAATCGGAGGACGTGTGCTCAGGTAGTTGGTACCTCCAAAACAAGGAGGGACTTGGCTTCTCGAAGACCATATAGGTGTCGCTTGTGCCGCAAGAAAGGGCACAATATTAGGACATGTCCTAGGGGAAGTGTCAGATATGAACATCCTCAAGAGTAG 1227 0.4499 MMERPSPDILFLMISYEIYSFSTPFRVPRSSPWTRTDIQLLIFLPSWRKMSFFPSIACSFVGDESFSLPTPAQMGYSPPEELFGLEVELNPRKAGSQTSEPRSWFGPNGQYIKELPCPSCRGRGYTPCTVCGIERSRSDCPRCNGKGILTCHQCLGDCVTWEESIDEQPWERAHSISPLRVQEDDEVDNLDIKLDVKKKSKRVYHSPPPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPALHAQRVAAIKKSKGTVAARKHTSETMKAFFSDPENRQKRSIAMKGVKFFCQNCGREGHRRHYCSELKDSLIHRQFRCRVCGEKGHNRRTCSKLRISHRKGKLIKHYRCKICRQYGHNRRTCAQVVGTSKTRRDLASRRPYRCRLCRKKGHNIRTCPRGSVRYEHPQE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1724 408 SMART c2hcfinal6 317 333 IPR001878 GO:0003676|GO:0008270
Bisa01g1724 408 SMART c2hcfinal6 382 398 IPR001878 GO:0003676|GO:0008270
Bisa01g1724 408 SMART c2hcfinal6 290 306 IPR001878 GO:0003676|GO:0008270
Bisa01g1724 408 SMART c2hcfinal6 348 364 IPR001878 GO:0003676|GO:0008270
Bisa01g1724 408 Gene3D - 342 406 - -
Bisa01g1724 408 SUPERFAMILY Retrovirus zinc finger-like domains 288 334 IPR036875 GO:0003676|GO:0008270
Bisa01g1724 408 Gene3D - 284 337 - -
Bisa01g1724 408 SUPERFAMILY Retrovirus zinc finger-like domains 342 399 IPR036875 GO:0003676|GO:0008270
Bisa01g1724 408 ProSiteProfiles Zinc finger CCHC-type profile. 317 333 IPR001878 GO:0003676|GO:0008270
Bisa01g1724 408 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 72 332 - -
Bisa01g1724 408 ProSiteProfiles Zinc finger CCHC-type profile. 291 306 IPR001878 GO:0003676|GO:0008270
Bisa01g1724 408 Pfam Zinc knuckle 379 397 IPR025829 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1724 25 401 C2H2 Transcription Factor Family AT5G20220 59.241 2.08e-157 448