Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1722 ATGAAGAAACCCCCGAAATCTTTCTTGTTCTTGTTCTTGTTCTTGTTCTGTTCGGTGGCTATACCTACTCTGCATGCAAGCCCCTTAGAGCAAGAATTCTGGAAAGAGCATTCCAAAGAGTTTGATGAGTATTGGAAAGACAGAGCCAACCAAGCTGCAACAGCCAACCAGGAAGAGTATCATAATAATCCTTATGAAGTTGTGGCCAACCTCACAGCCACTGTTGATCGTGCCCTTCTTGAAAATGGGAAAAAAGGGAGGAAGTTGGGGGGGGCTGGGTGTCCATGCGTGGCCACTAACCCCATTGACATGTGCTGGAGGTGCGATCCCAACTGGGCTAACAACCGCCAGAGGCTCGCAGATTGCGCTCTAGGCTTCGGAAAAGGCACTGTTGGAGGAAAGGGTGGTCCATACTACGTGGTCACAGACCCCTCAGATGAAGATCTGATTAACCCCAAAGTAGGTACCCTTCGCCATGCAGTCACACGCACTGGTCCCTTGTGGATCATCTTCCAGCACAGCATGGTGATTAGGCTCCAACAGGAGCTGATTATGACTGGCTATAAGACCATCGATGGCAGAGGAGCCACTGTTGTCATCGCCGGAGGAGCTGGCATCACCGTCCAGTTTGTCAAGGATGTGATCATTCACGGGATTAAGATCTTCAACATCCACCAGGGAAATGGTGGGATGATTATAGACAGTGAGAACCATTATGGTATTAGGACACAAAGCGACGGTGATGGGATTTCAATCTATGGCGCCAGTAAAGTTTGGATTGACCATGTTTCCATGAGCAACTGCCGAGATGGGCTCATTGATGCCATTATGGGATCCACTGCTATCACCATCTCCAACAGCCATTTCACAAAGCACAATGAGGTGATGTTGTTTGGTGCCAGTGACACCTATTCAGGGGATCAGATTATGCAAATCACAGTGGCATTCAACCACTACGGAAAGGGACTAGTCCAAAGGATGCCAAGGTGCAGGTGGGGTTTCGTCCATGTGATTAACAATGACTACACCCACTGGGAAATGTATGCCATTGGTGGCAGCCGGAATCCCACCATCATCAGTGAGGGTAACAGATTCATTGCTCCAGATAACATCAACGCCAAAGAGATCACAAAGAGAGACTACGCATCAGAAAATATATGGAGCGGTTGGCAATGGAGATCAATCAACGACTTATACCTGAACGGAGCATTCTTCGTCGAATCTGGGACTCAAATTCCAGTGTCAAGTAAAGACATGCTCAAGGGCAAGCCTGGATCATTCGTCCCAAGTCTCACACGTGATGCCGGATACCTTGCGTGCCAGTGGGAAATGGAGCTTGCCTCTGTGAAATCTGAACTTAGCCCAACAAGTCATGGTGGTGCGAGTAATAATAGTAAGTGTGGCAAAAGGAGACGACGAGATTCATCTATGGCCTTACTAGAGGGCGATGAACATCCACAAGAACAGCAGCCAAAGGATGACCAATCAACCACCACCACCACCACCACAGTGAAGAGAAGCTCGAGGTTTCGGGGAGTTAGCAGACATAGGTGGACTGGAAGGTTTGAAGCCCATCTATGGGATAAGGGGACATGGAATCCAACTCAAAAGAAGAAAGGAAAGCAAGGGGCTTACAATGATGAAGAAGCAGCTGCTAGAGCTTATGATTTGGCTGCTATCAAGTACTGGGGAACTTCAACTTTCATAAATTTCCCTGTATCTGATTATGAGAAAGAGATTGAGATAATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCATTGAGAAGAAGAAGCAGTGGTTTTTCCAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATAGGCAGAGTGTTTGGCAACAAGTATCTCTACCTTGGGACTTACAGTACGCAAGAGGAGGCTGCTCGTGCATATGACATTGCAGCAATTGAGTACAGAGGCATAAATGCAGTGACAAACTTTGACTTGAGCGCATACATCAGATGGCTAAGACCAGGAGCACCTTCTGCTTCTTTTCTAGAAGAAATGCCTAGCACAGATTCTCAGAACATGAAAACCTCAAACCTTGTCCAAACCAAAGGAACCACCACTGAGGTATCCAATTTCAGCCTCCATCCATTCCCAGGTGGTGACTCACACACCACCCAGAAGAAACAAAGCATGTCACAATATAAGAGCCCTCTATGTGAGTGCAATAGTAAGTCATCTTCCCCAACAGCACTCGGACTTCTGTTAAAGTCCTCAGTATTTAGAGAGCTGATGCAGAGGAATCTGAATTCTGCTAATGAAGAAGCAGAAAAAAGTGAATTGAAAATCCCACAAGAAAGCAATGATGGGATTGGAGGGGTTTTTGATAATGAAATTGCCAGCAGATTTTGCATGGAATCACCTAAAGAAAGTACATTGCCACTATATCATAGAACTGTGCAATCCCTATCGAATGGTGCTTTAAACTGA 2490 0.4618 MKKPPKSFLFLFLFLFCSVAIPTLHASPLEQEFWKEHSKEFDEYWKDRANQAATANQEEYHNNPYEVVANLTATVDRALLENGKKGRKLGGAGCPCVATNPIDMCWRCDPNWANNRQRLADCALGFGKGTVGGKGGPYYVVTDPSDEDLINPKVGTLRHAVTRTGPLWIIFQHSMVIRLQQELIMTGYKTIDGRGATVVIAGGAGITVQFVKDVIIHGIKIFNIHQGNGGMIIDSENHYGIRTQSDGDGISIYGASKVWIDHVSMSNCRDGLIDAIMGSTAITISNSHFTKHNEVMLFGASDTYSGDQIMQITVAFNHYGKGLVQRMPRCRWGFVHVINNDYTHWEMYAIGGSRNPTIISEGNRFIAPDNINAKEITKRDYASENIWSGWQWRSINDLYLNGAFFVESGTQIPVSSKDMLKGKPGSFVPSLTRDAGYLACQWEMELASVKSELSPTSHGGASNNSKCGKRRRRDSSMALLEGDEHPQEQQPKDDQSTTTTTTTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAAIKYWGTSTFINFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSAYIRWLRPGAPSASFLEEMPSTDSQNMKTSNLVQTKGTTTEVSNFSLHPFPGGDSHTTQKKQSMSQYKSPLCECNSKSSSPTALGLLLKSSVFRELMQRNLNSANEEAEKSELKIPQESNDGIGGVFDNEIASRFCMESPKESTLPLYHRTVQSLSNGALN 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1722 829 Pfam Pectate lyase, N terminus 39 82 IPR007524 GO:0030570
Bisa01g1722 829 SUPERFAMILY Pectin lyase-like 100 437 IPR011050 -
Bisa01g1722 829 MobiDBLite consensus disorder prediction 492 508 - -
Bisa01g1722 829 CDD AP2 607 668 IPR001471 GO:0003700|GO:0006355
Bisa01g1722 829 SUPERFAMILY DNA-binding domain 607 668 IPR016177 GO:0003677
Bisa01g1722 829 Gene3D AP2/ERF domain 508 574 IPR036955 GO:0003700|GO:0006355
Bisa01g1722 829 Gene3D AP2/ERF domain 607 668 IPR036955 GO:0003700|GO:0006355
Bisa01g1722 829 PANTHER PECTATE LYASE 18-RELATED 54 441 IPR045032 GO:0030570
Bisa01g1722 829 Pfam AP2 domain 508 564 IPR001471 GO:0003700|GO:0006355
Bisa01g1722 829 Pfam AP2 domain 607 658 IPR001471 GO:0003700|GO:0006355
Bisa01g1722 829 SUPERFAMILY DNA-binding domain 508 574 IPR016177 GO:0003677
Bisa01g1722 829 Gene3D - 99 439 IPR012334 -
Bisa01g1722 829 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Bisa01g1722 829 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Bisa01g1722 829 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Bisa01g1722 829 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Bisa01g1722 829 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Bisa01g1722 829 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Bisa01g1722 829 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Bisa01g1722 829 FunFam AP2-like ethylene-responsive transcription factor 607 668 - -
Bisa01g1722 829 SMART rav1_2 509 578 IPR001471 GO:0003700|GO:0006355
Bisa01g1722 829 SMART rav1_2 608 672 IPR001471 GO:0003700|GO:0006355
Bisa01g1722 829 Coils Coil 762 789 - -
Bisa01g1722 829 Pfam Pectate lyase 210 365 IPR002022 -
Bisa01g1722 829 MobiDBLite consensus disorder prediction 711 732 - -
Bisa01g1722 829 SMART amb_all 174 371 IPR002022 -
Bisa01g1722 829 MobiDBLite consensus disorder prediction 467 491 - -
Bisa01g1722 829 MobiDBLite consensus disorder prediction 451 512 - -
Bisa01g1722 829 ProSiteProfiles AP2/ERF domain profile. 509 572 IPR001471 GO:0003700|GO:0006355
Bisa01g1722 829 ProSiteProfiles AP2/ERF domain profile. 608 666 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1722 Bisa-ChrBisa01 29689867 29697245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1722 8 441 Polysaccharide Lyase AT1G14420 55.066 4.69e-173 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bisa01g1722 Pectate_lyase_4 1.7e-18 CL0268