Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1710 ATGGCCATGGACGGTTCTAAGGTTTTTGGGTCTTCAAATATCACAGCTTTACTTCAAAACGAAAGGCTTCCTTCCACCTCCCATGTTCTTGACTCTCTCTGGCTTCACTCCGCTGACCCCACTTTTCAAGTTTCAGGTTCAAGGCCTCTGGTTGGTTTTGAGAGTGTTAATGGCAGCACAGTGACAGATAGGCCGTTCTTCCGAGCTCCGGACAAAGAAGAGAACGCCGAAGAGGAATTCGAGGCTTGCTTTCATCAACCAGGAAAGAAAAGGAGGCTCGCGAGCGAGCAAGTTCACTTCCTCGAAAGGAACTTCGAGGTAGAGAACAAGCTCGAGCCCGAACGAAAAGTTCAACTGGCCAAAGAGCTGGGATTGCAGCCCAGGCAAGTTGCTATCTGGTTTCAAAACCGAAGGGCTCGATTCAAGACGAAACAGCTCGAAAAAGACTACGCCACCTTGAAAGCTAGCTACGACAAACTCAAAGGTGACTATGACAATCTTGTTCGCGAGAACGACAAGTTAAAACAAGAGGTGAATTCTCTGAACACCACATTGATGAGCAGAGAGAAAGAGAAAGGAGGGAATTTTGGGGAGACCCGTGATGTCTTGATCTCGAATGATGGTGGGTCTGAAAATAGGTCGAAAGTGGAACAACTCAGAATGGTAATTTGCAAACAGGAAGATGCCAATTCAGCTAAAAGCGATGTGTTTGATTCGGATAGCCCACACCACACTGCAGATTCCTCCCACGCCTTCGAACCAGAGCACTCAGATTTCTCGCAGGACGAAGAAGAAAACCTGAGCCATAACCTCTTGAGTCTACCATGCTTACCCAAGGTTGAAGAACACTGTAGCTTTGGATTCCCTGAGGAAGACCAAACCTTCTGTTTTTGGCCTTACTGA 903 0.4729 MAMDGSKVFGSSNITALLQNERLPSTSHVLDSLWLHSADPTFQVSGSRPLVGFESVNGSTVTDRPFFRAPDKEENAEEEFEACFHQPGKKRRLASEQVHFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYATLKASYDKLKGDYDNLVRENDKLKQEVNSLNTTLMSREKEKGGNFGETRDVLISNDGGSENRSKVEQLRMVICKQEDANSAKSDVFDSDSPHHTADSSHAFEPEHSDFSQDEEENLSHNLLSLPCLPKVEEHCSFGFPEEDQTFCFWPY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1710 300 Pfam Homeodomain 89 142 IPR001356 GO:0003677
Bisa01g1710 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 75 243 IPR045224 GO:0003700
Bisa01g1710 300 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Bisa01g1710 300 Gene3D - 92 138 - -
Bisa01g1710 300 PRINTS Lambda-repressor HTH signature 115 124 IPR000047 GO:0003677
Bisa01g1710 300 PRINTS Lambda-repressor HTH signature 124 140 IPR000047 GO:0003677
Bisa01g1710 300 CDD homeodomain 87 145 IPR001356 GO:0003677
Bisa01g1710 300 Pfam Homeobox associated leucine zipper 144 184 IPR003106 GO:0006355|GO:0043565
Bisa01g1710 300 FunFam Homeobox-leucine zipper protein HAT5 82 146 - -
Bisa01g1710 300 MobiDBLite consensus disorder prediction 188 211 - -
Bisa01g1710 300 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Bisa01g1710 300 SMART HOX_1 86 148 IPR001356 GO:0003677
Bisa01g1710 300 Gene3D - 139 186 - -
Bisa01g1710 300 MobiDBLite consensus disorder prediction 233 265 - -
Bisa01g1710 300 SUPERFAMILY Homeodomain-like 82 146 IPR009057 -
Bisa01g1710 300 Coils Coil 143 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1710 Bisa-ChrBisa01 29506184 29507338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1710 24 254 Homeobox Transcription Factor Family AT3G01470 42.735 9.59e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa01g1710 Homeodomain 2.2e-15 CL0123