Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1662 ATGGAGATTGCTGTTGACTTCGAAGAATTATTCAAACCTCTGCCATACAAAGAGCTTCATTTTTTTTCCTATTTGTTTTCTATTGTGTTTGTTGGAAAAGAAAAGTTTGTTGTAGAGGACTCTGCAGTTCGGGAACTTCACGATCACTTTGTAATTTTCGGATTTGGCTATTCAGAGGATTTTAAATTTTATCGGAGTTGGCAGCATGATTTGGTGTTGAAGAGGGGTGAGGTGAGGATTTTTTTTTGGTTGGAGATGAAAAGGTCTAGAGACGATGTTTATATGAACTCTCAACTCAAACGGCCCATGGTATCTTCCCGAGGAGAAGCCTCGGGGCAACCTCAGATGATGGCTGGAAGTGCTCAGAAACTTACGACAAATGATGCCTTAGCATATCTCAAGGCAGTAAAGGAAATATTTCAAGATAAAAGGGAAAAATATGACGACTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAGTTGATACTGTGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCATAGGGATCTAATTTTGGGATTTAATACCTTCTTGCCGAAGGGATATGAAATCACACTTCCATTGGAGGATGAACAACCTCTACAAAAGAAGCCCGTTGAATTTGAAGAAGCTATAAACTTTGTGAACAAAATTAAGTCTCGGTTTCAAGGTGATGATCATGTCTACAAGTCGTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTTCCGAGGTCTACCAGGAGGTTGCTTCACTTTTCCATGACCATCCAGACCTTCTTGAAGAGTTTACTCACTTTCTTCCAGATACTTCCGCAAGTGCAACAGCATCTACACATCATGCTGCTTCTGTTCGGAATTCTATGCTTCGTGACAGGAGCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGAAAAGAGGGAAAGAACCATGGCTTCGCATGGTGATCATGACCTTAGTGTTGATCACCCTGATCCAGATCATGACCGCGTGCTGACAAAGGCAGAAAAGGAGCAGAGAAGGCGTGTTGAGAAGGAAAAGGACCTCAAGGAAGAGAGGGACAGGAGAGAACGGGAACGGGATGATAGAAATTATGGGCATGATGGTAGCCGGGACTTCACTATGCAACGTTTCCCCCACAAACGGAAATCTGGTCGTAGAACTGATGATGTCAGTGCTGAACCATTGCATCAAAGTGGTGATTCTGATGAAAATTTTAGTGCCCGCCCTATGTCATCCACCTGTGATGACAGGAGTTCGGTGAAGAGTATGTATAGTCAAGAATTTGCTTTCTGTGAAAAAGTCAAGGACAAATTACGAAATCCTGATGTTTATCAGGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAAATAATTACCCGGCAAGAACTGGAGTCCTTGGTTGGTGACTTACTGGGAAAATATCCAGACCTTATGGAGGGGTTTAATGATTTTTTGTCTAGGTGTGAGAAGAATGATGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTCTGGAATGAAGGGCTTGCATCTAAACCAGTGAAGATAGAGGACAAGGATAGAGATAGAAGCCGAGATCATGATAGGGATGATCGGGTTAAAGAAAGAGATCGTGAACTCCGAGAAAGGGACAAATCTGCTTCCTTTTCATACAAGGATGTTTCAGGTCCTAAGATGTCTCCATATTCCAGCAAGGATAAGTATTTGGCAAAACCTATAAATGAGCTAGACCTTTCTAACTGTGAGCAATGCACTCCTAGCTATCGTCTCCTACCACAAAATTACCCAACACCCACAGCTAGCCAGAGAACTGAGCTTGGTGCTGAAGTAATTAATGATCACTGGGTTTCTGTCACTTCAGGAAGTGAGGATTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACGACCAAGCGAGTAGAAGAGCTCTTGGAAAAGATCAATAATAATGTTGTTAAAGCAGATAGTCCAATTCGTATTGAGGAGCACTTGACAGCTATAAACCGAAGGTGTATTGAACGATTATATGGTGACCATGCCCTTGATACAATAGAGGTGTTAAAAAAAAATGCACCTCTAGCTTTGCCAGTCATATTAATCCGTTTGAAGCAGAAACAAGAAGAGTGGGCAAGGTGTCGTGCTGATTTCAATAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAAGATACAAAAAGCTTGAGCACAAAAGCCTTACTTGCTGAAATCAAAGAAATTAGTGAGAAGAAACGCAAGGAAGATGATGTTCTTCTTGCAATTGCTGCCGGAAATAGAAGGCCAATTATTCCACATTTGGAATTTGAATATCCTGATCCAGATATTCATGAGGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAATGTTTTTAGAACCCTTGCTTGGTGTTCCTTCTCGACCCCAGGGTGCTGAGGATACGGAAGATGTTGTCAAGACTAAGCATAATTCTGTCAAAAGTGGCACTACAAGTCTTGCTGACGGGAGTGGTAGTCCTGGTGTTGGGGAAAATGTAATGAATCCAAAACCATTAAATACATCTGGAAGTGGAGACGATAATATTTCATTAGAACAACCAAATTTTTGCAAAGCATGGCAAACAACGAAGGATAGCAGGGTCAAAGAAGATAACTGTCTTGGTGCAGAGCATAATGCACGCAAGACTGAAACTTTGGGCTGTAGTACACAGCATGATGGAATGCACATTAATGCATCTGTGCCTGATGAAGTATCAGGAGTCAACAAGCAAGATCATTCCAATGAACTGTTAGTGAATGCTAATACCTCAATGGCTTCTGGAATAGAACAAAGTAATGGAAGAACAAGCATAGATAATGCATCAGGTCCTACAGCTACTCCATCTAAACCTGGTAATGATGCCGCTGAGGGAGGACTTGATTTACCTTCATTGGAGGGTGGTGATTTTACTAGACCAGCTACATCCACGAATGGGGCCATTGCTGAAGGCAGCAAAGTTCACAGATACCAAGAAGAATCTGTGGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGCTATCTCCAAATGGAGATTTTGAGGATAATTTTGCAGTTTATGGATATACTAGCTTAACATCAGTAGGGCATAAAGGAAAGAGTCGTGGTGTGAGTACACAATACCAAAATCGACATGGAGAAGATTGTGGTGGTGAGGCAGGAGAAAATGATGCTGATGATGAAGGTGAAGGAAGTTTTCACAGGACATCAGAGGACAGTGAGAATGCTTCTGAAAATGGTCATGCTACTGGAAGCGAGTCTGCTGATGGTGAGGCAAGTTATCGAGAAGAGCAAGAGGAGGATGGGGAACATGAACACAATAACAAGGCTGAGAGTGAAGGCGAAGCTGAAGGAATGGCTGATGCCAATGATGTGGAAGGAGACAGAGCCTCATTGCCATTTTCAGAACGCTTTTTACGATCTGTAAAGCCTCTGGCCAAGCATGTTCCCTTAGTGTTGCATGAGAAAGAAAGGGTTTCTCGAGTTTTTTATGGAAATGACTCCTTCTATGTGCTTTTTAGGCTTCACCGAACATTGTATGAGAGGATACAATCAGCAAAGTTAAACTCATCATCTGCAGAAAGGAAGTGGAGGGCTTCAAATGATGCAAACTCTACTGATCAGTATGGCAGATTCATGACTGCCCTTTACAATCTATTGGATGGTTCTTCTGACAACACCAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATATGTGTTATTCACATTAGACAAGTTGATATATAAACTTGTTAAACAGCTGCAAACTGTTGCTACTGATGAGATGGATAACAAACTTCTCCAACTCCATTCATATGAGAAATCAAGAAAATCTGGAGGATTTTTTGATTTAGTTTATCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATACCGTATTGAATGTTCATCTACACCAACACGCCTGCATATTCAATTAATGGACTATGGACACGATAAGCCTGAAGCAACTGCTGTGTCTATGGACCCTAATTTTTCAGCCTATCTGCTCAATGACTTCCTTTCTGTTGGTCCTGGAAAAAAGAAGTCAGGGATCTTCTTGAAGAGGAATAAACGCAGATATGCCTGTGGTGATGAAATTTCAAGCCAGGCCATGGAGGGACTGCAAGTTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTTTCGTACGTCTTAGATACAGAAGACTTTTTATTTCGGATGAGAAGGAAAAGGAAAGCTTTGCATCAAAATGGCTCATGCCATGAACAGGCAAATTCTTCAAACATTTGTTTGAGGAGAGTGCAGCGGCTCCGCAAACTGTTTTCCATTACATGA 4566 0.4098 MEIAVDFEELFKPLPYKELHFFSYLFSIVFVGKEKFVVEDSAVRELHDHFVIFGFGYSEDFKFYRSWQHDLVLKRGEVRIFFWLEMKRSRDDVYMNSQLKRPMVSSRGEASGQPQMMAGSAQKLTTNDALAYLKAVKEIFQDKREKYDDFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPLQKKPVEFEEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLEEFTHFLPDTSASATASTHHAASVRNSMLRDRSSAMPTVRQMHVEKRERTMASHGDHDLSVDHPDPDHDRVLTKAEKEQRRRVEKEKDLKEERDRRERERDDRNYGHDGSRDFTMQRFPHKRKSGRRTDDVSAEPLHQSGDSDENFSARPMSSTCDDRSSVKSMYSQEFAFCEKVKDKLRNPDVYQEFLKCLHIYSREIITRQELESLVGDLLGKYPDLMEGFNDFLSRCEKNDGFLAGVMNKKSFWNEGLASKPVKIEDKDRDRSRDHDRDDRVKERDRELRERDKSASFSYKDVSGPKMSPYSSKDKYLAKPINELDLSNCEQCTPSYRLLPQNYPTPTASQRTELGAEVINDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNVVKADSPIRIEEHLTAINRRCIERLYGDHALDTIEVLKKNAPLALPVILIRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPIIPHLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTMFLEPLLGVPSRPQGAEDTEDVVKTKHNSVKSGTTSLADGSGSPGVGENVMNPKPLNTSGSGDDNISLEQPNFCKAWQTTKDSRVKEDNCLGAEHNARKTETLGCSTQHDGMHINASVPDEVSGVNKQDHSNELLVNANTSMASGIEQSNGRTSIDNASGPTATPSKPGNDAAEGGLDLPSLEGGDFTRPATSTNGAIAEGSKVHRYQEESVGHFKSEREEGELSPNGDFEDNFAVYGYTSLTSVGHKGKSRGVSTQYQNRHGEDCGGEAGENDADDEGEGSFHRTSEDSENASENGHATGSESADGEASYREEQEEDGEHEHNNKAESEGEAEGMADANDVEGDRASLPFSERFLRSVKPLAKHVPLVLHEKERVSRVFYGNDSFYVLFRLHRTLYERIQSAKLNSSSAERKWRASNDANSTDQYGRFMTALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMDNKLLQLHSYEKSRKSGGFFDLVYHENARVLLHDENIYRIECSSTPTRLHIQLMDYGHDKPEATAVSMDPNFSAYLLNDFLSVGPGKKKSGIFLKRNKRRYACGDEISSQAMEGLQVINGLECKIACSSSKVSYVLDTEDFLFRMRRKRKALHQNGSCHEQANSSNICLRRVQRLRKLFSIT 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1662 1521 Pfam Paired amphipathic helix repeat 451 495 IPR003822 GO:0006355
Bisa01g1662 1521 Pfam Paired amphipathic helix repeat 145 189 IPR003822 GO:0006355
Bisa01g1662 1521 Pfam Paired amphipathic helix repeat 231 275 IPR003822 GO:0006355
Bisa01g1662 1521 Pfam C-terminal domain of Sin3a protein 1236 1481 IPR031693 -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 526 559 - -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 284 302 - -
Bisa01g1662 1521 Coils Coil 341 370 - -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 884 898 - -
Bisa01g1662 1521 ProSiteProfiles PAH domain profile. 208 278 IPR003822 GO:0006355
Bisa01g1662 1521 Gene3D Paired amphipathic helix 128 190 IPR036600 GO:0006355
Bisa01g1662 1521 SUPERFAMILY PAH2 domain 429 496 IPR036600 GO:0006355
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 526 570 - -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 1100 1194 - -
Bisa01g1662 1521 Gene3D Paired amphipathic helix 206 279 IPR036600 GO:0006355
Bisa01g1662 1521 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 1170 1189 - -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 1133 1148 - -
Bisa01g1662 1521 FunFam Paired amphipathic helix SIN3-like protein 207 278 - -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 284 427 - -
Bisa01g1662 1521 FunFam Paired amphipathic helix protein Sin3 128 190 - -
Bisa01g1662 1521 SUPERFAMILY PAH2 domain 122 191 IPR036600 GO:0006355
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 309 405 - -
Bisa01g1662 1521 FunFam Paired amphipathic helix protein SIN3 427 500 - -
Bisa01g1662 1521 SUPERFAMILY PAH2 domain 205 277 IPR036600 GO:0006355
Bisa01g1662 1521 ProSiteProfiles PAH domain profile. 429 498 IPR003822 GO:0006355
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 1059 1082 - -
Bisa01g1662 1521 Gene3D Paired amphipathic helix 427 500 IPR036600 GO:0006355
Bisa01g1662 1521 Pfam Sin3 family co-repressor 592 683 IPR013194 -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 882 907 - -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 1002 1022 - -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 1002 1086 - -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 1100 1118 - -
Bisa01g1662 1521 SMART hdac_interact2seq4b 590 690 IPR013194 -
Bisa01g1662 1521 PANTHER SIN3B-RELATED 122 1380 IPR039774 GO:0003714
Bisa01g1662 1521 Coils Coil 663 683 - -
Bisa01g1662 1521 MobiDBLite consensus disorder prediction 406 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1662 Bisa-ChrBisa01 28537980 28547838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1662 118 227 WRKY Transcription Factor Family AT4G12020 51.818 2.24e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bisa01g1662 Sin3a_C 8.3e-58 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2342 11 47662888 47673066 Bisa01g1662 01 28537980 28547838 CCT
Bisa01g1662 01 28537980 28547838 Bisa01g1662 01 28537980 28547838 ECH