Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1642 ATGATCCTCTTCCGTTCTTCCTTGATGTTCCATCTCCAAATATCTTCGATTCGATCCGAACTGTTCTCCCATTTCAAGCGTACACACTCCTTCAGCACTTCTACTTCGCCTTCTCTTGTTAAAGTCCGCTTCTTTTCGCTGACCCTTGCACGCCAACGGCAATCCAGGGCGGTCGGGAGCGCCATCACTGCAGTAGCAGACACAAAGGGGAGAGAGACGTTCTTGGCGGAAGAAAACGTTTCGTGGAATTCACTAGGTCTGTCTGATACCATTTCCCGAGCTCTGTCTGACATTGGTCTCGATAGGCCGTCTCTGGTTCAGGCTTCGTCTATACCATCCGTGCTTTCTGGAAAGGATGTGGTTATTGCAGCTGAGACCGGCAGTGGTAAAACACACGGTTACCTAGTTCCTCTAATTGATAAGCTGCGAGCTGCCCACCACAATTCTGAAAATACTGTTCTTAATCAGGAAGAGTCGCTGCCATGTAAGGTTCTGCTCATTCTGTGTCCAAATGTACAACTGTGTGAACAAGTAGTTCGGATGGCTAACAGTCTTCGCGGGGACAATGGCAAACCTATTGTTAGTGTGGCAGCCATTTGTGGCAGGCAGGGATGGCCAATCCGTGAACCGGATGTAATTGTGACAACACCTGTTGCTCTTTTAAATTATGTTGACAAAAGCAGAAGCCATCGAATGGATTTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTATCTGTGGGAGCTTCCAGAATAAAGTAATCCGTCTAATAAACTTGCTTCGCTTTGATGAAAAGCTCTTGTCTCAATCAAAAGAATCAGTGGCAGAGTTGCCAATGCAACCGGAATCTGCATTGTCATCACACAGTGCTTTATATGGTGAAGAGAAACAGCCAACTGAAGACACCATCCTAGAAGATGAAGATGGTGATCCTGAGCAGATGAAGCTGCTGGTTGATGTCAATAATGAAGCTGATTGTGTCACAAGAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCCACACTTCCCGTGAACGGAAAGAAGACAGCTGGAGCGATATTAAAACATATGTTTCCTGATGCTGAGTGGGTTAGTGGAAATTATCTTCACTGTCACAATCCAAGATTGGAGCAGAGGTGGATTGAAGTTAATGTTGATACACAGGTGGATGAACTCATAGATGCTGTGAGACAAGGTTCTAGTAAAGATTTGGTTAGTGCTGGTAGCATTTGTCGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCACAAATATTGCTCAGAGCTGGGATTGAATGTTTACGCTATCATAAGGATCGCACCTTGGAGGAGCGAGCAAAGACCTTAGTTGAATTCCAAGAGAGAGGTGGTGTTCTTGTATGCACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAACATCTCACATGTTATTCAGGCAGATTTTGCTAGTTCTGCTGTGGACTTCTTGCATAGGGTGGGTCGCACAGCTAGAGCCGGTCAATTTGGACTTGTTACTAGCATGTACACTGAACCTAACCGGGAGCTTGTTGATGCAGTTCGACGAGCAGGGGAACTCGATCTACCTGTGGAGACTGCATTTAGCAGGAAAAGAAGTTTCCGTAACAAGATAAAGAAGAGGGTTGCAAACCAAGTCAGAGATTCAGCTAGTATTAAAGAGAGTGCTCTGGCTTGA 1752 0.4521 MILFRSSLMFHLQISSIRSELFSHFKRTHSFSTSTSPSLVKVRFFSLTLARQRQSRAVGSAITAVADTKGRETFLAEENVSWNSLGLSDTISRALSDIGLDRPSLVQASSIPSVLSGKDVVIAAETGSGKTHGYLVPLIDKLRAAHHNSENTVLNQEESLPCKVLLILCPNVQLCEQVVRMANSLRGDNGKPIVSVAAICGRQGWPIREPDVIVTTPVALLNYVDKSRSHRMDFMRGVKYVVFDEADMLICGSFQNKVIRLINLLRFDEKLLSQSKESVAELPMQPESALSSHSALYGEEKQPTEDTILEDEDGDPEQMKLLVDVNNEADCVTRRDWRRVRKNYERSKQYIFVAATLPVNGKKTAGAILKHMFPDAEWVSGNYLHCHNPRLEQRWIEVNVDTQVDELIDAVRQGSSKDLVSAGSICRTMVFANTVEAVEAVAQILLRAGIECLRYHKDRTLEERAKTLVEFQERGGVLVCTDAAARGVDIPNISHVIQADFASSAVDFLHRVGRTARAGQFGLVTSMYTEPNRELVDAVRRAGELDLPVETAFSRKRSFRNKIKKRVANQVRDSASIKESALA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1642 583 MobiDBLite consensus disorder prediction 282 298 - -
Bisa01g1642 583 Gene3D - 393 583 IPR027417 -
Bisa01g1642 583 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 375 IPR014001 -
Bisa01g1642 583 MobiDBLite consensus disorder prediction 282 311 - -
Bisa01g1642 583 Pfam Helicase conserved C-terminal domain 427 519 IPR001650 -
Bisa01g1642 583 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Bisa01g1642 583 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 90 543 - -
Bisa01g1642 583 Pfam DEAD/DEAH box helicase 106 272 IPR011545 GO:0003676|GO:0005524
Bisa01g1642 583 SMART ultradead3 99 394 IPR014001 -
Bisa01g1642 583 Gene3D - 48 373 IPR027417 -
Bisa01g1642 583 SMART helicmild6 439 519 IPR001650 -
Bisa01g1642 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 531 IPR027417 -
Bisa01g1642 583 CDD DEADc 91 272 - -
Bisa01g1642 583 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 403 575 IPR001650 -
Bisa01g1642 583 CDD SF2_C_DEAD 391 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1642 Bisa-ChrBisa01 28157240 28162188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1642 334 547 Eukaryotic Initiation Factors Gene Family AT5G11200 26.016 1.32e-13 71.2