Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1620 ATGCCATATTCTACAATGTCCTGGGTTCACTATCAAATCCGGCAGAGCAATGGTGATATGACTAGCCAGCCTACTCTTTCCCCCTCTTCTTCATCATCAGTGCCTTACATTTCTAACTACCAGAAACAATTGAGCCCGCCTCCAGTTTCTTCTTCATCTGGCAACAAAATAAGCCCAGCAGTTCTTTTTATCATAGTTGTTCTGGCTATTGTGTTTTTCATTTCTGGCCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCATAGGTCGTCTTCATCAATTTCTCAATCCGATAGATATCCAGATATGTCCGAATCCGATACTTACCAGAGGCAGTTACAGCAGCTCTTCCACCTTCACGATTCAGGACTGGATCAGGCTTTTATAGATGCGCTTCCTGTCTTCTTCTATAAAGAGATAATAGGCTTGAAAGAGCCATTTGATTGTGCCGTTTGCCTTTGTGAATTCTCAGAACAGGACAAGCTGAGATTGCTGCCCATGTGTAACCATGCTTTTCACATTGACTGCATTGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTCTATTCACCGGGATTTGCCTTTGAAAACCCAGCTTATGACTTTGAAGATCCAAGGGAAGAAGATGGGGTTTCAGCAGGCAGTGCTGGAGGTGGGACTACTTCTGTCCACAAACCTGCAGAAAATCACATTATGAGTGGGAAAAGGGTGTTTTCTGTCAGACTTGGAAAATTCAGAAGCTCTAATACTAGAGAGGGAATAGTAGAAAGAAGTCAAGGAGAAAGCAGCAGCAGCAATTTGGATGCAAGGAGATGCTATTCAATGGGGTCTTTTCAATATGTAGTTGCTGATTCAGATTTAAGAGTGGCTTTGTGCCCCAATAGAGGTGATGGGGGCAGTAGCAGTATGAGACAACAATTGAAATTGCGAGCAGCTCAAAATGGTAATAATCCTTCCACTGATGCAGCAGACTTAGAGGGCAAAAAACTTAACATTGCGAGGAAAGGGGAAAGTTTTTCTGTTTCCAAGATCTGGCTATGGTCTAAGAAGGATAAATTACCAAGTTCTTCGTTAGCCCATATGGGAAATTCTAATCCTGTCACTGCAAATTTGCCATGGATGAATAGAACGCGAGCAATGAGTACGAAGATTAAAGTAAAGTCAAATCAGGGGTTGCTTTTTGTTTTGGATGCTTTGGCATTCTGTGGAGGTTGGCTTTTCCGCTTTTGA 1248 0.4239 MPYSTMSWVHYQIRQSNGDMTSQPTLSPSSSSSVPYISNYQKQLSPPPVSSSSGNKISPAVLFIIVVLAIVFFISGLLHLLVRFLIKHRSSSSISQSDRYPDMSESDTYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFSEQDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYSPGFAFENPAYDFEDPREEDGVSAGSAGGGTTSVHKPAENHIMSGKRVFSVRLGKFRSSNTREGIVERSQGESSSSNLDARRCYSMGSFQYVVADSDLRVALCPNRGDGGSSSMRQQLKLRAAQNGNNPSTDAADLEGKKLNIARKGESFSVSKIWLWSKKDKLPSSSLAHMGNSNPVTANLPWMNRTRAMSTKIKVKSNQGLLFVLDALAFCGGWLFRF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1620 415 Pfam Ring finger domain 148 191 IPR001841 -
Bisa01g1620 415 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Bisa01g1620 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 351 - -
Bisa01g1620 415 SMART ring_2 149 190 IPR001841 -
Bisa01g1620 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 196 IPR013083 -
Bisa01g1620 415 MobiDBLite consensus disorder prediction 211 232 - -
Bisa01g1620 415 FunFam RING-H2 finger protein ATL46 111 196 - -
Bisa01g1620 415 CDD RING-H2_EL5-like 148 191 - -
Bisa01g1620 415 SUPERFAMILY RING/U-box 128 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1620 Bisa-ChrBisa01 27740766 27742540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1620 51 363 C3H Transcription Factor Family AT2G18650 39.706 6.98e-58 193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g1620 01 27740766 27742540 Bisa01g1620 01 27740766 27742540 ECH