Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1564 ATGGAGGAATTCTACGGAGTACCGTTGACGGCGGAGTACTCTGACGAGGCCTTGATGACGCCGGAGAACCTGATCTTCGCCGATTACCAGAGCTTTCTCATGTCCTCCGGCTGCTCCTGCGATCGGAATCCGGTCTTCGGATCCGACGAGTTGCTCTCCGCTGTCACCGAGGCCGCGCCGCTGTTCATTGCTCCCGAAATTCAGCGCCAAGACGAAGCCTCCGCCCTCATGAAAGCCAAAATCACTTCTCATCCTCACTACCCTCACCTCCTCCAAGCTTACATCGACTGCCAAAAGGTAGGAGCGCCTCCTGAAATCGCGCGTTTGTTGGACGAAATCCGGCGAGAAAATGACCTTCGTAAGCGGGACGTTGTTTCCACGTGCTTCGGGGCCGATCCCGAACTTGACGAATTCATGGAAACTTACTGCGACTTGTTGGTGAAATATAAATCTGATCTTGTGCGGCCTTTTGATGAAGCAACTGATTTCCTCAACAAAATCGAAACGCAGTTTAGCCATCTCTGCTCCGGTGCTTGCGTTCCAAGCCTTTCCGACGACGGGACTGTGTCTTCAGAAGATTTTAGTACAGTAGATGGCGAAACCCAAGATGGTCAACTGCGGGGTGAAGATCGAGATCTTAAAGAAAAACTTCTACACAGGTTTGGGAGTCATATCAGTACTTTGAAACTGGTGTTCTCGAAGAAGAAAAAGAAGGGTAAGCTTCCAAAAGAAGCAAGGCAAACACTTCTTGAGTGGTGGAATGTGCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGCACTGGCTAAGTCGACGGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAGCGTCACTGGAAACCATCCGAGAACATGCAGTTTTCTGTTACGGATAGTTTGACTGGTCCGTTCTTTACTGATGTATGA 948 0.4905 MEEFYGVPLTAEYSDEALMTPENLIFADYQSFLMSSGCSCDRNPVFGSDELLSAVTEAAPLFIAPEIQRQDEASALMKAKITSHPHYPHLLQAYIDCQKVGAPPEIARLLDEIRRENDLRKRDVVSTCFGADPELDEFMETYCDLLVKYKSDLVRPFDEATDFLNKIETQFSHLCSGACVPSLSDDGTVSSEDFSTVDGETQDGQLRGEDRDLKEKLLHRFGSHISTLKLVFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENMQFSVTDSLTGPFFTDV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1564 315 ProSitePatterns 'Homeobox' domain signature. 270 293 IPR017970 GO:0000981|GO:0006355
Bisa01g1564 315 Pfam KNOX1 domain 77 118 IPR005540 GO:0003677|GO:0005634
Bisa01g1564 315 ProSiteProfiles 'Homeobox' domain profile. 232 295 IPR001356 GO:0003677
Bisa01g1564 315 SMART KNOX2_2 125 176 IPR005541 GO:0003677|GO:0005634
Bisa01g1564 315 CDD homeodomain 244 296 IPR001356 GO:0003677
Bisa01g1564 315 Gene3D - 232 304 - -
Bisa01g1564 315 SMART HOX_1 234 299 IPR001356 GO:0003677
Bisa01g1564 315 Pfam Homeobox KN domain 252 291 IPR008422 GO:0003677|GO:0006355
Bisa01g1564 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 302 - -
Bisa01g1564 315 SUPERFAMILY Homeodomain-like 233 308 IPR009057 -
Bisa01g1564 315 Pfam KNOX2 domain 129 175 IPR005541 GO:0003677|GO:0005634
Bisa01g1564 315 SMART KNOX1_2 75 119 IPR005540 GO:0003677|GO:0005634
Bisa01g1564 315 FunFam Homeobox protein knotted-1-like 2 237 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1564 Bisa-ChrBisa01 26685541 26692092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1564 1 314 Homeobox Transcription Factor Family AT1G23380 63.720 6.91e-135 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa01g1564 KNOX2 2.3e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2244 11 46312124 46319452 Bisa01g1564 01 26685541 26692092 CCT