Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1522 ATGAATAAGAAGCCTATGGCGAGGGAGAAGATTCAGATTAGGAAGATCGACAATGCCACAGCAAGGCAGGTGACGTTCTCGAAGCGACGCCGAGGACTGTTCAAGAAAGCTGAGGAGCTCTCGGTTCTCTGTGATGCAGATGTTGCTCTCATATTGTTCTCCTCTTCTGGGAAGCTCTTCCACTACTCTAGCTCAAGCATGAAGGGAATACTAGAAAGGCACCGTTTACACTCTAAGAACCTCGCAAAGCTGGACGAGCCGTCTCTTGAATTGCAGCTGGTGGCGGACAGCAACTACACTAGAATGAGCAAGGAACTTGTTAAGAAGAGCCGTCAACTAAGGCAAATGAGAGGAGAGGATCTTTTAGGTTTAAATATTGAAGAATTGCAGCAATTAGAGATGTCTCTGGAAGCTGGGTTGGGCCGTATAATTGAAACCAAGGGTCAGATGATTATGAATGAGATCAGTGATCTTCAAAGAAAGGGAAAGCAATTGATGGAAGAAAATGAGCGTTTAAGACGTCAAAAATATCAAGTGAGGGAGGACCCAGTGATGCCGAGGAAGGACAGTCGTCGGAATCCGTCGGCAACGTTTGCTACTCCACTCACTATGATAACTCGGACACGTCCCTCAAGTTGGGGCTACCATACTCTGGCTGAAGGAAATTTCCCGAGTTTGAAACCTGTTAGCAGGAGAATCCAGGTCTATGAATGTTATGTCTTCCTCTTTTTACACTTTCTCTCTCCCGCACGTTCTGCATCTGCAATATTTCTCTCCACCATGGATGAAGAGTATGATGTTATAGTGCTCGGAACCGGACTTAAAGAATGCATCCTTAGCGGCCTTCTCTCTGTTGACGGACTCAAGGTATTGCATATGGATAGAAATGACTATTACGGAGGAGAATCCACGTCACTGAATCTTAAACAGCTTTGGAAGCGATTCAGGGGTAGTGATAATCCTCCAGAGAAATTAGGGCCAAGCAAAGATTACAATGTTGATATGGTCCCAAAGTTCACGATGGCCAATGGAACTTTGGTTCGTGTTCTTATCCACACTAACGTAACCAAATATCTGAATTTCAAGGCTGTAGATGGCAGTTATGTGTACAACAAAAAAAAGGTTCATAAAGTACCAGCAAATGACGTAGAAGCTTTAAAATCTCCACTTATGGGGCTATTTGAGAAGCGGCGTGCTCGAAAATTTTTCATTTACGTACAAGACTATGATGAAAAAGATGCAAAGTCTCATGAGGGCCTGGACCTTAACAAAGTTACAGCAAAAGAACTCATTTCGAAATATGGGCTAGATGACAACACAACTGACTTCATTGGCCATGCAATTGCGCTCCATTTGGATGATAATTACTTGAACCAGCCTGCTTTCGATTTTGTGAAAAGAATGAAGCTATATGCAGAGTCTTTAGCACGATTTCGGGGTGGATCCCCTTATATTTACCCACTCTATGGGCTGGGAGAGCTTCCCCAGGGATTCGCTCGTTTGAGTGCTGTTTATGGTGGTACCTACATGCTCAGCAAGCCAGGATGCAAGGTTGAGTTTGATGACAGTGGAAAGGCTATCGGTGTGACCTCAGAAGGAGAAACAGCTAAATGCAAGAAAGTTGTTTGTGATCCTTCATACTTACCTGACAAGGTGAAGAAGGTCGGGAAAGTGGCCCGTGCTATATGTATTATGAGCCATCCGATCCCAAACACCAACGACTCTCCCTCAGTTCAGGTTATTCTGCCCCAGAAACAACTTGACCGTAAATCAGATATGTACCTTTTCTGCTGCTCCTACTCTCACAATGTAGCTCCGAAAGGGAAGTACATTGCTTTTGTTTCAACAGAAGCAGAGACCGACAACCCTGAAGTGGAACTGAAGCCCGGCGTAGATCTCCTTGGACCCTTGGATGAAATCTTTTATGACACTTACGATAGATATGAACCAACAAATCAAAACGCTGGTGACAACTGCTTCATATCCACAAGCTATGACGCGACGACTCATTTTGAAACCACGGTGAGAGACGTGATTGCCATGTACAGCAAGATAACTGGAAAGGAACTGGACCTGTCTGTGGATCTAAGTGCTGCCAGTGCTGCTGAAGAAGAATAA 2118 0.4452 MNKKPMAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALILFSSSGKLFHYSSSSMKGILERHRLHSKNLAKLDEPSLELQLVADSNYTRMSKELVKKSRQLRQMRGEDLLGLNIEELQQLEMSLEAGLGRIIETKGQMIMNEISDLQRKGKQLMEENERLRRQKYQVREDPVMPRKDSRRNPSATFATPLTMITRTRPSSWGYHTLAEGNFPSLKPVSRRIQVYECYVFLFLHFLSPARSASAIFLSTMDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLKQLWKRFRGSDNPPEKLGPSKDYNVDMVPKFTMANGTLVRVLIHTNVTKYLNFKAVDGSYVYNKKKVHKVPANDVEALKSPLMGLFEKRRARKFFIYVQDYDEKDAKSHEGLDLNKVTAKELISKYGLDDNTTDFIGHAIALHLDDNYLNQPAFDFVKRMKLYAESLARFRGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLSKPGCKVEFDDSGKAIGVTSEGETAKCKKVVCDPSYLPDKVKKVGKVARAICIMSHPIPNTNDSPSVQVILPQKQLDRKSDMYLFCCSYSHNVAPKGKYIAFVSTEAETDNPEVELKPGVDLLGPLDEIFYDTYDRYEPTNQNAGDNCFISTSYDATTHFETTVRDVIAMYSKITGKELDLSVDLSAASAAEEE 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1522 705 ProSiteProfiles K-box domain profile. 92 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa01g1522 705 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 317 647 - -
Bisa01g1522 705 PRINTS Rab GDI/REP protein family signature 284 301 IPR018203 GO:0005092|GO:0007264
Bisa01g1522 705 PRINTS Rab GDI/REP protein family signature 395 410 IPR018203 GO:0005092|GO:0007264
Bisa01g1522 705 PRINTS Rab GDI/REP protein family signature 346 362 IPR018203 GO:0005092|GO:0007264
Bisa01g1522 705 PRINTS Rab GDI/REP protein family signature 266 284 IPR018203 GO:0005092|GO:0007264
Bisa01g1522 705 PRINTS Rab GDI/REP protein family signature 472 489 IPR018203 GO:0005092|GO:0007264
Bisa01g1522 705 PRINTS Rab GDI/REP protein family signature 490 511 IPR018203 GO:0005092|GO:0007264
Bisa01g1522 705 PRINTS Rab GDI/REP protein family signature 329 346 IPR018203 GO:0005092|GO:0007264
Bisa01g1522 705 PANTHER RAB GDP-DISSOCIATION INHIBITOR 261 698 IPR018203 GO:0005092|GO:0007264
Bisa01g1522 705 Gene3D - 18 87 IPR036879 GO:0003677|GO:0046983
Bisa01g1522 705 PRINTS Rab GDI protein signature 583 599 IPR000806 GO:0005093|GO:0015031
Bisa01g1522 705 PRINTS Rab GDI protein signature 641 660 IPR000806 GO:0005093|GO:0015031
Bisa01g1522 705 PRINTS Rab GDI protein signature 662 682 IPR000806 GO:0005093|GO:0015031
Bisa01g1522 705 PRINTS Rab GDI protein signature 442 456 IPR000806 GO:0005093|GO:0015031
Bisa01g1522 705 PRINTS Rab GDI protein signature 385 400 IPR000806 GO:0005093|GO:0015031
Bisa01g1522 705 PRINTS Rab GDI protein signature 608 626 IPR000806 GO:0005093|GO:0015031
Bisa01g1522 705 PRINTS Rab GDI protein signature 540 554 IPR000806 GO:0005093|GO:0015031
Bisa01g1522 705 PRINTS Rab GDI protein signature 335 348 IPR000806 GO:0005093|GO:0015031
Bisa01g1522 705 PRINTS Rab GDI protein signature 276 288 IPR000806 GO:0005093|GO:0015031
Bisa01g1522 705 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Bisa01g1522 705 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Bisa01g1522 705 FunFam Transcription factor, MADS-box 18 88 - -
Bisa01g1522 705 SUPERFAMILY FAD/NAD(P)-binding domain 650 693 IPR036188 -
Bisa01g1522 705 SUPERFAMILY SRF-like 8 80 IPR036879 GO:0003677|GO:0046983
Bisa01g1522 705 Coils Coil 699 705 - -
Bisa01g1522 705 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 378 483 - -
Bisa01g1522 705 Gene3D - 262 690 IPR036188 -
Bisa01g1522 705 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Bisa01g1522 705 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Bisa01g1522 705 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Bisa01g1522 705 Pfam K-box region 97 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa01g1522 705 CDD MADS_MEF2_like 7 82 IPR033896 GO:0000977|GO:0045944
Bisa01g1522 705 ProSitePatterns MADS-box domain signature. 8 62 IPR002100 GO:0003677|GO:0046983
Bisa01g1522 705 FunFam Rab GDP dissociation inhibitor 259 390 - -
Bisa01g1522 705 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Bisa01g1522 705 Coils Coil 155 175 - -
Bisa01g1522 705 SUPERFAMILY FAD-linked reductases, C-terminal domain 552 649 - -
Bisa01g1522 705 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 378 483 - -
Bisa01g1522 705 SUPERFAMILY FAD/NAD(P)-binding domain 261 548 IPR036188 -
Bisa01g1522 705 Pfam GDP dissociation inhibitor 261 693 IPR018203 GO:0005092|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1522 Bisa-ChrBisa01 25806093 25819135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1522 6 182 MADS-box Gene Family AT2G22540 75.141 1.93e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa01g1522 GDI 1.3e-226 CL0063