LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g1505	ATGTTTGAGCCGGGAATCAAGCAAGGTTCAGATTTCACGCACACGCAAAGAGAGAGATACAGGAGAAGAGGTGAAGGAAATCCAGAAATGGAATCAACAAGTAACCAAGGGAGAGCATATTCATGCGACGACGAGGCATCTCCAAGATGCGTATTGGAAATCCAGGTTCCGAGTACAGACTCAGATCGGAGCAGCGGATGCAGCTCTTGTTCGCCGGGGAAATCCTCGCCGGCAGGGGAACGGACGCTGCCGCCGCTTGGGCGAGATGTGCACCTGCCGCAATGGAAAGGAGTGATGGACGCGTTTAGAATCAACTCTAGGAGACTAACGTCGCTGCCGTTGATAACGTCGACGTACATGATGTCTAGGAAGAGCTTGAGGAAATTAGCTCGGATCCGAAGCGCAGAAGATAGTGTTGATCTTTCAGCTTTTCGAACGAAGGCATCGTGGAAAAACTTCCCTTACTCAGACCTCACCGCCGCCACTGACAGTTTTAATCCCGAGAACATGATAGGGAAAGGTGGGCATGCTGAAGTGTACAAAGGACGCTTACCAGATGGCAAAATTGTGGGAGTGAAGAAGCTTGTGAATGAAGAAATGGATGATGCAGATAATACGGGTGACTTCTTAACAGAGCTAGGAATCATAGCCCACATTAACCATCCAAATTGCTGCCGTCTATATGGCTTCGGAATTGAGAAAGGCCTTTACTTTGTCCTTCAATATGCCCTTCATGGCAGCCTAGCCTCTCTGCTTTTTGGTCCTCAAATGCTGGAGTGGAAAGTGAGGTTCAAGGTGGCCATGGGCGTCGCAGATGGATTGCGGTATCTTCATCATGAGTGTCCCAGACGAATCATTCACAGAGACATCAAGGCTTCTAACATATTACTCAACGAAAACTATGACCCCGAGATTTCAGATTTTGGATTGGCTAAGTGGCTCCCAGAGAAGTGGGATCACCATGTAGTATTCCCAATAGAGGGTACATTCGGGTATTTGGCTCCAGAGTATTTTATGCATGGAATTGTGGATGAGAAGACCGACGTATTCGCATTTGGGGTTTTGTTACTCGAGATTATCTCAGGTCGTCGCGCAGTGGATTCCGAAAGTAGGCAGAGTCTTGTGATCTGGGCAAAGCCACTACTGGAAGCGAGCAATGTGAAGGAATTAGCAGACCCAAGATTAGAAGATGATTATGATTCCGAAGAAATGAAGCGTGTCATGGTTACAGCTTCCATGTGTGTTCATCAGACACCCTCCAAGCGCCCATACATGGATCGGGTAGTACACATGCTGAAGGGGGAAGAAGGACTAGTTGAAACGAAGCAACAAACTAGAACTCCGAGATCCCTCATGTTGGATGCGTGCGACTTAGAAGATTACTCTTGCTCGAATTACTTGAACGATCTCAATCGCCACAGGCAACTAGTGATGGAGTGA	1440	0.4778	MFEPGIKQGSDFTHTQRERYRRRGEGNPEMESTSNQGRAYSCDDEASPRCVLEIQVPSTDSDRSSGCSSCSPGKSSPAGERTLPPLGRDVHLPQWKGVMDAFRINSRRLTSLPLITSTYMMSRKSLRKLARIRSAEDSVDLSAFRTKASWKNFPYSDLTAATDSFNPENMIGKGGHAEVYKGRLPDGKIVGVKKLVNEEMDDADNTGDFLTELGIIAHINHPNCCRLYGFGIEKGLYFVLQYALHGSLASLLFGPQMLEWKVRFKVAMGVADGLRYLHHECPRRIIHRDIKASNILLNENYDPEISDFGLAKWLPEKWDHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIISGRRAVDSESRQSLVIWAKPLLEASNVKELADPRLEDDYDSEEMKRVMVTASMCVHQTPSKRPYMDRVVHMLKGEEGLVETKQQTRTPRSLMLDACDLEDYSCSNYLNDLNRHRQLVME	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g1505	479	Gene3D	Phosphorylase Kinase; domain 1	124	242	-	-
	Bisa01g1505	479	MobiDBLite	consensus disorder prediction	1	88	-	-
	Bisa01g1505	479	Gene3D	Transferase(Phosphotransferase) domain 1	244	453	-	-
	Bisa01g1505	479	MobiDBLite	consensus disorder prediction	12	28	-	-
	Bisa01g1505	479	SUPERFAMILY	Protein kinase-like (PK-like)	147	432	IPR011009	-
	Bisa01g1505	479	SMART	serkin_6	165	425	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g1505	479	Pfam	Protein kinase domain	168	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g1505	479	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	285	297	IPR008271	GO:0004672\|GO:0006468
	Bisa01g1505	479	MobiDBLite	consensus disorder prediction	57	76	-	-
	Bisa01g1505	479	ProSiteProfiles	Protein kinase domain profile.	165	438	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g1505	479	PANTHER	OS08G0249100 PROTEIN	30	455	IPR046958	-
	Bisa01g1505	479	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	244	446	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g1505	Bisa-ChrBisa01	25527911	25532485	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g1505	153	443	Receptor kinase-like Gene Family	AT1G53420	43.144	4.89e-70	238

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Bisa01g1505		Pkinase	9.4e-41	CL0016