Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1477 ATGTCAGTCATTCTGTTCTTCTTCGGTAATGAAGTTGCAAGGTTTGAATTTGCAGGTTTCAGAATTGTGAAAGATGAAGAAGATAGGGGAGAGAAGGAGGCGGGTTTTCTTGTTGTGGTGGTTTGGAATGACTGTGCAGCTCTGCTTCTTGCTGGGTGGATCAGAAGAGCTTTAGGAAGGATCCACACTTCCAATGCGAGACCCTCTGTTTCTGCGGTTACGCTGAATACAGAAGATCATCAACAAGTGGTGATTGACAATGGCATCGTCCAAGTCACTTTGTCCACACCCGATGGCTATGTTCTTGGAATATCGTATAATGGGATCGACAACGTACTGGAATCTCGTCACGAAGAACAAGACAGAGGGTATTTTGATGTTGTTTGGAATAAACCAGGAAAAAATAGCACTTTTCAGAGAATCCATGGCACCGAATTTTCAGTTGTAGCTGCGGACGAGAACCAAGTGGAGCTTTCGTTTGTAAGAACGTGGACTTCTTCCATGGAAGGCACTGATGTCCCCATAAACATAGACAAAAGGTATGTATTGAGAAGAGGCGACTCGGGATTTTATTGTTACGTAATATTCGATCGCCGAGAAGGATTTCCAGCAGTGGAGGTGGATCAAATTAGATATGTCTTCAAACTCCGAGAAGACAGGTTCCACTATATGGCCGTATCAGATTATAGGCAGAGAAGGATGCCAACGATGGAAGACAGAGAGAGTGGGCAAATCCTAGCTTATCCCGAAGCTGTTCTGCTAACCAAGCCAGCAAACGAAGAGTTTAGGGGAGAGGTGGACGACAAATACCAGTACTCCTGTGAGAATAAAGACAACAGCGTACATGGGTGGATTAGCTTTGAATCTGATGCGCCCGTGGGCTTCTGGATGATAACGCCTAGCGATGAGTTTCGCAACGCTGGGCCCATCAAGCAAGACCTCACCTCTCATGTCGGCCCCTTCACTCTCTCCATGTTTGTTAGCACCCATTATGCTGGAAAGGAGGTCACCATGGCATTTAAAGAAGGGGAGACTTATAAGAAGGTTTTCGGCCCAGTTTTCGTGTACCTTAACTCTGTTTCAAGCGATGAGAATCCACAAACACTGTGGACAGATGCAGTGAACCAGATGTCTAAGGAAACCAAAAATTGGCCTTACGATTTCCCTCAATCACAAGATTACATTCCGCCAAATCAACGTGGAATAGTTGCCGGACGATTGCTAGTTCAAGATCGGTACATCAGGGGAGGCAGATTTCTGTACGCTGACTCTGCTTATGTTGGTCTGGCTCTGCCTGGTGCTGCTGGATCATGGGAAAGAGAAAGCAAGGGTTATCAGTTCTGGACACAAGCTGACAAGAAGGGCTATTTTGTAATAAAAAATGTTGTGCCAGGGGACTATAACTTGTTTGCATGGGTTCCTGGTTTTATTGGTGACTACAGATACAACGCTACCATCACCATCACACCAGGGTTTTTAATCAAATTGGATTCATTAGTGTATAATCCTCCAAGAAATGGTCCTACCCTTTGGGAAATTGGCGTCCCAGATCGGTCAGCAGCAGAATTCTATATCCCAGACCCTTATCCCACACTCATGAACAAATTATACAATGAACAACCCAGGGACAAGTATAGACAATACGGACTGTGGGAGCGTTATGCTGATTTATATCCAGACAATGATCTAGTTTACACTGTTGGTGTCGATGAGTATGATAAAGACTGGTTCTTTGCTCATGTTACAAGGAGCACAGGAAATAGGACATACCAACCAACGACATGGCAGATTATATTTGAACTTCAAAACGACACATTCATAGGAAATTACACATTAGTTCTGGCTTTAGCATCAGCCAATGATGCCGATTTGCAGGTTTGGTTCAATGATCGAGGTGACTCTCCTCCACAGCTTGAAACTGGGAAAATAGGCAGAGACAGTGCCATAGCAAGGCATGGAATCCATGGATTATATTGGTTGTTCAGTGTTGATGTTCCAAGCGACCGTTTAGTGAAAGGGAAGAATACTATGTATTTAAGGCAGTCATGGGCCATTAATCCTTTCCAAGGAGTTATGTATGACTATATACGTTTGGAAAGACCGACAACTCTAAAAACTTGA 2121 0.4413 MSVILFFFGNEVARFEFAGFRIVKDEEDRGEKEAGFLVVVVWNDCAALLLAGWIRRALGRIHTSNARPSVSAVTLNTEDHQQVVIDNGIVQVTLSTPDGYVLGISYNGIDNVLESRHEEQDRGYFDVVWNKPGKNSTFQRIHGTEFSVVAADENQVELSFVRTWTSSMEGTDVPINIDKRYVLRRGDSGFYCYVIFDRREGFPAVEVDQIRYVFKLREDRFHYMAVSDYRQRRMPTMEDRESGQILAYPEAVLLTKPANEEFRGEVDDKYQYSCENKDNSVHGWISFESDAPVGFWMITPSDEFRNAGPIKQDLTSHVGPFTLSMFVSTHYAGKEVTMAFKEGETYKKVFGPVFVYLNSVSSDENPQTLWTDAVNQMSKETKNWPYDFPQSQDYIPPNQRGIVAGRLLVQDRYIRGGRFLYADSAYVGLALPGAAGSWERESKGYQFWTQADKKGYFVIKNVVPGDYNLFAWVPGFIGDYRYNATITITPGFLIKLDSLVYNPPRNGPTLWEIGVPDRSAAEFYIPDPYPTLMNKLYNEQPRDKYRQYGLWERYADLYPDNDLVYTVGVDEYDKDWFFAHVTRSTGNRTYQPTTWQIIFELQNDTFIGNYTLVLALASANDADLQVWFNDRGDSPPQLETGKIGRDSAIARHGIHGLYWLFSVDVPSDRLVKGKNTMYLRQSWAINPFQGVMYDYIRLERPTTLKT 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1477 706 SUPERFAMILY Galactose mutarotase-like 77 362 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bisa01g1477 706 CDD RGL4_N 76 363 - -
Bisa01g1477 706 FunFam Rhamnogalacturonate lyase B 396 496 - -
Bisa01g1477 706 SUPERFAMILY Starch-binding domain-like 395 497 IPR013784 GO:0030246
Bisa01g1477 706 CDD RGL4_C 511 699 - -
Bisa01g1477 706 CDD RGL4_M 399 491 IPR029413 -
Bisa01g1477 706 SUPERFAMILY Galactose-binding domain-like 506 699 IPR008979 -
Bisa01g1477 706 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 74 702 - -
Bisa01g1477 706 Pfam Polysaccharide lyase family 4, domain III 509 698 IPR029411 -
Bisa01g1477 706 Pfam Polysaccharide lyase family 4, domain II 423 491 IPR029413 -
Bisa01g1477 706 Pfam Rhamnogalacturonate lyase family 66 266 IPR010325 -
Bisa01g1477 706 Gene3D - 507 699 - -
Bisa01g1477 706 Gene3D - 395 493 - -
Bisa01g1477 706 Gene3D - 74 378 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1477 Bisa-ChrBisa01 24923594 24928487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1477 70 702 Polysaccharide Lyase AT1G09890 57.457 0.0 744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2154 11 45109153 45114792 Bisa01g1477 01 24923594 24928487 CCT