Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1465 ATGGGGAGAGGGAAAATTGTGATACGAAGGATCGACAATTCTGCAAGCAGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATTAAGAAAGCCAAAGAGCTTGCAACTCTTTGTGATGTAGAGGTTGGACTAGTCATCTACTCCAGCACAGGGAGGCTTCATGAATATGCGAGCACCAGCATGAGATCAGTGATTGAAAGATACAACACCTGCAAGGAGGGATATCAACAACTGATGAATCTGGAATCAGAGGTCAAGTTCTGGCAAAGGGAGGCAGAAGTCTTAAAACAGCAACTACAAAGTCTACAAGATAACTATCGAACACTAAATTTCAAGAGAAACAGGCAACTCATGGGAGAACAGCTTTATGGTCTAAGTGCCGAAAACCTACAAGATCTAGAGAATCAGCTGGAAATGGGTATCCAAGGTGTCCGCATGAGAAAGGAACAAATTCTAAGAGATGAAATCCAAGAGCTGACAACAAAGGTTTATGGCACAACAGATGTGGTTGCGGCAAGCAGAAATGCGTTCGTGTCATATGGTATTAATGCAGGAGAGGGTCCACGAGCACTAACCCAACTTCAGTTATGCCAATCTGAGCAAGAAGCCTGA 615 0.4374 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELATLCDVEVGLVIYSSTGRLHEYASTSMRSVIERYNTCKEGYQQLMNLESEVKFWQREAEVLKQQLQSLQDNYRTLNFKRNRQLMGEQLYGLSAENLQDLENQLEMGIQGVRMRKEQILRDEIQELTTKVYGTTDVVAASRNAFVSYGINAGEGPRALTQLQLCQSEQEA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1465 204 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Bisa01g1465 204 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bisa01g1465 204 ProSiteProfiles K-box domain profile. 86 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa01g1465 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa01g1465 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa01g1465 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa01g1465 204 Pfam K-box region 84 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa01g1465 204 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bisa01g1465 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa01g1465 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Bisa01g1465 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa01g1465 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa01g1465 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa01g1465 204 Coils Coil 72 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1465 Bisa-ChrBisa01 24664070 24672191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1465 1 164 MADS-box Gene Family AT4G37940 62.805 2.67e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa01g1465 K-box 5.2e-16 No_clan