Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1408 ATGGCACAGGGAACTGACTGCGAGGCATTGGCTTCCACTCTTCCCTCATCCACTGTTTCTCCCCCTTTCGTACCTCGCCGGAAAACCTCTTTTGCCACTGGGAATCAGCTACCCTTCCCGGCGACCTTGCTTGGACACCTCTGCGGCCTGGTTTCAGCCTTGTGCTCGGCGTTCTGCGAGAATGCGGTGGAAGGAAGAGTTTGTTTGCCCAAGGAACGTAGGAATGTGTTAGAATCTTTGAAGCATAATAGGCTTCGGCAAGCAAAATCTGTCACTGCCACCAAGACAAGTGTTGCTAATATAATGACTAGAAGTGGAGGAGATGCTTTAAGAGCTTCGTCATCATGTGGTATGAGATTGCATGGTAATGCAGATACTTTTTTCAAGCGGAAGGTGAATAAGTTTGACATGAGTGATCTAGAATGGACTGAAAAAATTCCAGAGTGTCCTTTGTATTCCCCAACAAAGGAGGAATTTGAGGATCCTTTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGAATATGCAAGATTATTTCTCCTTTGAGTGCTTCTGTTCCTGCTGGAGTTGTTTTGATGAAGGAGAAAGCAGGATTTAAGTTTGCAACTAGAGTACAACCGCTTCGCCTTGCTGAGTGGGATACTGAAGACAGAGTTACGTTTTTCATGAGCGGAAGAAATTATACATTTTCCGATTTTGAAAAAATGGCGAACAAGGTTTTTGCGCGTAGATATTTCAGTTCTGGATGTCTTCCTGCTGCATACTTGGAAAAAGAGTTTTGGCATGAAATTAGCTGCGGAAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCTTTTTCATCTTCCCCCATCGATCAGCTAGGGAGCAGCAAATGGAATTTGAAGAAGCTCTCAAGGTTGCCTAAGTCCATTTTGCGGCTCTTGGAAACAGTAATTCCGGGAGTAACTGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAGGATCACTATTTGTACAGTATCAATTATCATCACTGTGGGGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTATACTAATGACATTCTGTCAAATGAAGGGGAAGATGGAGCATTTGATGTTCTCCTGGGGAAAACAACTCTGTTTCCTCCAAATATTTTGTTGGACCATGACGTCCCTGTCTACAAAGCTGTTCAAAAGCCCGGGGAGTTTATAATTACCTTCCCTAGAGCTTATCACGCTGGCTTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAATTTTGCCACTGGTGATTGGTTTCCTTTAGGTGCCATTGCTAGCAGGCGATATGCACATCTTAACAGGGTTCCTCTGCTACCTCATGAAGAACTTTTATGCAAAGAAGCAATGCTCCTTTATACAAGCTTAGAACTTGAAGATTTAGACTTTCCTTCTGCAGACTTGATATCTCATAATAGCATCAAGATCTCTTTTGTTAATTTGATGCGCTTCCATCATTGTGCTCGCTGGTTCTTAGTGAAGTCAAGGGCATGCACAAATGTCTTTTCACATTCCCATAGCACAATTCTCTGTAGTCTCTGCAAACGTGACTGTTATGTAGCTTATGTTGACTGCAATTGTCACATGCATCCAGTGTGTCTTCGTCATGATATCGAATCTCTTGAATTCACCTGTGGGAGCAAACACACTCTTTACTTGAGGGAGGATATTGAAGATATGGAAGCTGCGGCCAAGAGGTTTGAGCAGGAAGATGCAATATTGGATGAGATAGTTAAGCAGATCAAGGCTGACAAAAACATGTATTCATATCCTTTGTCAAATATGTTTCACAGAGCTGAGGCAGATGGATATACTCCTTACTGTGAGATAAAATTTTATCCTGTTATTGAATCTTACACAGGGACAAATCAGTCACTGAATAATAAAGAGTGTTCTATTCTAAGTCAATTGGCTTTGAGACATTGCTCAGAATCAGAGTATCACAAACTCGAAGTGTCTAAGATTCCTTACTTTTCTGCTACATCCACTCTTTGCTCTCTTTCAGATCCTCTTCAGATCTCCGTTTCTCCAAAAAATGACGAGGAGCGTGCAAACTTTAATTTAAACATGATTGATTCTGAAGAGCTTTGTAAAAGGGTGTCTAATAGTGTATGTGAATCTTCAGTATCTTCTGCACGGAACCATGAAAGCTCGAGTAATACTCAGGGTGATCTTTATAAATTAGAGATGAAACACATAGTGGATAATGAAAGTGATGATTCTGATTCAGAGATATTTAGGGTAAAGCGGCCTTCTTCTCTTATGGCAGAGAGGAGAAATGGGAATGATGGGATGTCTTCAAAGCATTCTAATCACCAGGGACTAAAACGATTGAAGAAAAACCTTAATGAAGGAAGAAGTGGGCAACTAATTGATTGCAGCAAAACCAGTGATTCAGGTTACAGATTTAGTCAATCTACCAGTCATAAAGTTGACAGCGAAAGTTCAACAAGGGATAGATATCTAAAGGGCAATGGCATTCCCATTTCTCAGGAATTAAGTAAACAACGAGATCACCACAAGAAAGATTGGTTGCAACAGACTGTTAAAGAACCGTCTCCCATAGAGATTGGATCTAAATGCCTTAAAGTCCGCGGCCATTCATTTCTGGGCATAGAGAGCAGATTGAATTGA 2739 0.4133 MAQGTDCEALASTLPSSTVSPPFVPRRKTSFATGNQLPFPATLLGHLCGLVSALCSAFCENAVEGRVCLPKERRNVLESLKHNRLRQAKSVTATKTSVANIMTRSGGDALRASSSCGMRLHGNADTFFKRKVNKFDMSDLEWTEKIPECPLYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFATRVQPLRLAEWDTEDRVTFFMSGRNYTFSDFEKMANKVFARRYFSSGCLPAAYLEKEFWHEISCGKMETVEYACDVDGSAFSSSPIDQLGSSKWNLKKLSRLPKSILRLLETVIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSNEGEDGAFDVLLGKTTLFPPNILLDHDVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFATGDWFPLGAIASRRYAHLNRVPLLPHEELLCKEAMLLYTSLELEDLDFPSADLISHNSIKISFVNLMRFHHCARWFLVKSRACTNVFSHSHSTILCSLCKRDCYVAYVDCNCHMHPVCLRHDIESLEFTCGSKHTLYLREDIEDMEAAAKRFEQEDAILDEIVKQIKADKNMYSYPLSNMFHRAEADGYTPYCEIKFYPVIESYTGTNQSLNNKECSILSQLALRHCSESEYHKLEVSKIPYFSATSTLCSLSDPLQISVSPKNDEERANFNLNMIDSEELCKRVSNSVCESSVSSARNHESSSNTQGDLYKLEMKHIVDNESDDSDSEIFRVKRPSSLMAERRNGNDGMSSKHSNHQGLKRLKKNLNEGRSGQLIDCSKTSDSGYRFSQSTSHKVDSESSTRDRYLKGNGIPISQELSKQRDHHKKDWLQQTVKEPSPIEIGSKCLKVRGHSFLGIESRLN 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1408 912 MobiDBLite consensus disorder prediction 822 846 - -
Bisa01g1408 912 SMART JmjN_1 148 189 IPR003349 -
Bisa01g1408 912 ProSiteProfiles JmjN domain profile. 149 190 IPR003349 -
Bisa01g1408 912 MobiDBLite consensus disorder prediction 821 862 - -
Bisa01g1408 912 Pfam jmjN domain 150 182 IPR003349 -
Bisa01g1408 912 SUPERFAMILY Clavaminate synthase-like 227 482 - -
Bisa01g1408 912 Gene3D Cupin 149 499 - -
Bisa01g1408 912 Pfam C5HC2 zinc finger 546 597 IPR004198 -
Bisa01g1408 912 PANTHER LYSINE-SPECIFIC DEMETHYLASE 141 858 - -
Bisa01g1408 912 FunFam Lysine-specific demethylase isoform A 144 493 - -
Bisa01g1408 912 ProSiteProfiles JmjC domain profile. 296 466 IPR003347 -
Bisa01g1408 912 SMART cupin_9 296 466 IPR003347 -
Bisa01g1408 912 Pfam JmjC domain, hydroxylase 326 449 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1408 Bisa-ChrBisa01 23780827 23787300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1408 146 616 JUMONJI Transcription Factor Family AT2G34880 33.031 1.76e-65 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bisa01g1408 JmjC 5.2e-39 CL0029