Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1399 ATGGAGAAAAAAACCTTATCGGTCTTGCCCTACGAAACACCCAGACTCCGAGACCATTACCTTGTGGGGAAGAAGCTCGGGCAAGGCCAATTTGGGACCACCTACCTCTGCACCCATAAGACAACGGGGAAGCACTACGCCTGCAAATCCATCCCCAAGCGGAAGCTCTTGTGCAAGGAGGACTACGATGACGTGTGGAGAGAGATTCAGATCATGCATCATCTGTCGGAGCACCCAAATGTGGTTCGGATACAAGGGACGTACGAGGACTCTGTGTTTGTGCACCTGGTAATGGAGCTCTGTGCTGGGGGTGAGCTGTTCGATAGGATCATTCAGAAGGGGCATTACAGCGAGAAAGAGGCGGTCAAGCTGATTAGGACCATTGTTGGTGTGGTGGAGGCTTGTCACTCTCTTGGGGTCATGCATAGGGATCTTAAGCCTGAGAATTTCTTGTTTGATAGTACAGGCGATGATGCCCAGATGAAAGCTACGGATTTTGGGCTCTCTGTGTTTTACAAGCCAGGACAAGCCTTTTCTGATGTAGTTGGAAGCCCCTACTATGTTGCCCCTGAGATATTGTGTAAGCATTATGGACCAGAAGTAGATGTATGGAGTGCTGGAGTTATCCTTTACATTTTGCTGAGTGGTGTCCCACCTTTTTGGGCCGAAACTGAACCAGGAATTTTCAGACAGATTTTACAAGGAAAGCTAGATTTTCATTCTGAACCATGGCCAAGTATCTCAGAAAGTGCTAAAGATTTGGTGAAGAAAATGCTTGAGAGGGACCCTAAAAATAGGATTTCTGCTCATGAAGTCTTATGTCACCCTTGGATAATTGATGATACAGTTGCCCCTGACAAACCTCTGGATTCTGCAGTTTTGTCACGTCTGAAGCAGTTCTCAGCCATGAATAAAGTAAAAAAGCTGGCACTGCGGGTCATAGCAGAAAGACTTTCAGAGGAAGAAATTGGTGGTTTAAAAGAGTTGTTCAAAATGATTGACACAGACCACAGTGGGACAATAACATTCGAGGAACTCAAAGCAGGCCTGAAAAGAGTGGGTTCTGATCTAATGGAATCTGAAATCAAAGCCCTCATGGATGCGGCCGATGTAGATCACAATGGTACAATAGATTATGGTGAATTTCTTGCTGCTACACTGCACATGAATAAGATGGAAAGAGAGGAGAATTTAGTTGCAGCCTTTGCCTATTTTGACAAAGATGGTAGTGGCTACATCACCATTGATGAACTTCAACAGGCTTGTACAGAGTTTGGCTTAGGTGATGTAAATCTAGAAGATATTTCAGAGATTGATCTAGACAATGATGGGAGAATTGATTATGGGGAGTTTGTGGCAATGATGAAAAGGGGTGATGGAAGTGGTATTGGTAAGAGCAGAACCTTGAAAGGCAATTTGAACTTCACTTTAGGCGATGCCTTCCAAGTAAATGAATCATCCTGA 1464 0.4467 MEKKTLSVLPYETPRLRDHYLVGKKLGQGQFGTTYLCTHKTTGKHYACKSIPKRKLLCKEDYDDVWREIQIMHHLSEHPNVVRIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEKEAVKLIRTIVGVVEACHSLGVMHRDLKPENFLFDSTGDDAQMKATDFGLSVFYKPGQAFSDVVGSPYYVAPEILCKHYGPEVDVWSAGVILYILLSGVPPFWAETEPGIFRQILQGKLDFHSEPWPSISESAKDLVKKMLERDPKNRISAHEVLCHPWIIDDTVAPDKPLDSAVLSRLKQFSAMNKVKKLALRVIAERLSEEEIGGLKELFKMIDTDHSGTITFEELKAGLKRVGSDLMESEIKALMDAADVDHNGTIDYGEFLAATLHMNKMEREENLVAAFAYFDKDGSGYITIDELQQACTEFGLGDVNLEDISEIDLDNDGRIDYGEFVAMMKRGDGSGIGKSRTLKGNLNFTLGDAFQVNESS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1399 487 FunFam Calcium-dependent protein kinase 1 286 459 - -
Bisa01g1399 487 SMART serkin_6 20 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g1399 487 FunFam CDPK-related kinase 3 12 180 - -
Bisa01g1399 487 ProSitePatterns EF-hand calcium-binding domain. 406 418 IPR018247 -
Bisa01g1399 487 Pfam Protein kinase domain 22 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g1399 487 SUPERFAMILY Protein kinase-like (PK-like) 16 288 IPR011009 -
Bisa01g1399 487 Gene3D Transferase(Phosphotransferase) domain 1 106 288 - -
Bisa01g1399 487 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Bisa01g1399 487 ProSiteProfiles EF-hand calcium-binding domain profile. 357 392 IPR002048 GO:0005509
Bisa01g1399 487 SUPERFAMILY EF-hand 307 458 IPR011992 -
Bisa01g1399 487 CDD EFh 398 456 IPR002048 GO:0005509
Bisa01g1399 487 Gene3D Phosphorylase Kinase; domain 1 21 105 - -
Bisa01g1399 487 CDD EFh 326 385 IPR002048 GO:0005509
Bisa01g1399 487 FunFam Calcium-dependent protein kinase 1 22 105 - -
Bisa01g1399 487 Pfam EF-hand domain pair 396 456 IPR002048 GO:0005509
Bisa01g1399 487 Pfam EF-hand domain pair 326 386 IPR002048 GO:0005509
Bisa01g1399 487 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Bisa01g1399 487 Gene3D - 289 458 - -
Bisa01g1399 487 FunFam Calcium-dependent protein kinase SK5 188 283 - -
Bisa01g1399 487 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Bisa01g1399 487 ProSiteProfiles EF-hand calcium-binding domain profile. 393 428 IPR002048 GO:0005509
Bisa01g1399 487 ProSiteProfiles Protein kinase domain profile. 20 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g1399 487 CDD STKc_CAMK 19 277 - -
Bisa01g1399 487 ProSitePatterns EF-hand calcium-binding domain. 334 346 IPR018247 -
Bisa01g1399 487 ProSiteProfiles EF-hand calcium-binding domain profile. 321 356 IPR002048 GO:0005509
Bisa01g1399 487 ProSiteProfiles EF-hand calcium-binding domain profile. 435 461 IPR002048 GO:0005509
Bisa01g1399 487 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 451 - -
Bisa01g1399 487 SMART efh_1 325 353 IPR002048 GO:0005509
Bisa01g1399 487 SMART efh_1 430 458 IPR002048 GO:0005509
Bisa01g1399 487 SMART efh_1 397 425 IPR002048 GO:0005509
Bisa01g1399 487 SMART efh_1 361 389 IPR002048 GO:0005509
Bisa01g1399 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1399 Bisa-ChrBisa01 23548967 23554426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1399 7 484 EF-hand Containing Proteins AT1G35670 82.881 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bisa01g1399 Pkinase 1.8e-77 CL0016