Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1388 ATGGTGAAGAGAAAGTCTAGCTCAGGGCTCTTCAAGAAAGCCAGTGAGCGTTGCACACTCTGCGGCATGGAGATAGCCATAATAGTCTTCTCTCCCGCTGATAAGGCCTTCTCCTTCGGCCACCCTGAAGTAGAATCCAACGTTGATCGCTATCTTTCTCGAAACACTGCACCAGAATTTGGGGCTCACCAGCTCGTCGAGACTCATCGGAATGCCAACGTTCGCGACCTCAACATGCAGCTGACGCAGCTTCTGAGCCAACTGGAGATTGAGAGGAAGCGAGGAGAAGAGTTAGACCAGGTGAGGAAAGCGAGGCAGAGACAAAACTGGTGGGAGAACCCTATTGAAGAATTAGGGTTTCATGAGTTACAACAGTTGATGATTGTAATGGAGGAACTGAAGAAGAATGTGGGGAAATTGGGTAGCAAGATGTTTGATGGATCATACTAG 450 0.4867 MVKRKSSSGLFKKASERCTLCGMEIAIIVFSPADKAFSFGHPEVESNVDRYLSRNTAPEFGAHQLVETHRNANVRDLNMQLTQLLSQLEIERKRGEELDQVRKARQRQNWWENPIEELGFHELQQLMIVMEELKKNVGKLGSKMFDGSY 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1388 149 Gene3D - 2 62 IPR036879 GO:0003677|GO:0046983
Bisa01g1388 149 PRINTS MADS domain signature 20 41 IPR002100 GO:0003677|GO:0046983
Bisa01g1388 149 PRINTS MADS domain signature 5 20 IPR002100 GO:0003677|GO:0046983
Bisa01g1388 149 PANTHER MADS BOX PROTEIN 5 137 - -
Bisa01g1388 149 SMART madsneu2 1 42 IPR002100 GO:0003677|GO:0046983
Bisa01g1388 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 8 39 IPR002100 GO:0003677|GO:0046983
Bisa01g1388 149 Gene3D - 63 147 - -
Bisa01g1388 149 SUPERFAMILY SRF-like 6 58 IPR036879 GO:0003677|GO:0046983
Bisa01g1388 149 Coils Coil 71 98 - -
Bisa01g1388 149 ProSiteProfiles MADS-box domain profile. 1 43 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1388 Bisa-ChrBisa01 23213468 23213993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1388 5 148 Type I MADS-box Gene Family AT5G60440 51.020 1.49e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa01g1388 SRF-TF 5.1e-12 No_clan