Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1353 ATGGGCCAAGAAGCCTCAACCACGCTTCAGCATCGCCTCCAATACATTCTCCACTCTCGTTCCGAGTGGTGGGTCTACACCATCTTTTGGCGAGCTTCCTCTAAACGCACAGATCATAGCGATAGGTCTCAGTCACTGTTAAACTGGGGAGATGGTCATTTCCGTGGCAAGAGCCACAGTACTACTAGTCACCAGCAATTCCGATTTCCGGACTGGGGCGAGGGGGATCACGTGAGGGAGCTGGAGTGGTTTTACACTGCCTCCGTAACGCAGTCGTTTTTGGAGGGGCTGGGAGTGGTGGGACGCGCCTTCACCTCAGCCACGCACGTGTGGTTCGCCGGGGAGAAGCAGTTAATTCGTTCCCAGGAGTGCGAGAGAGTTCGCGAAGCCGCGACGCACGGGATCAAAACTCTGGTGTTCATCCCCACCGAGTGTGGAGTCCTCGAGCTGGCATCCGCTGATCTGATCCCGCAAGACTGGAGCCTCCTCCGTTTGGTTAAAACGGTTTTTGATGATCAGTTTGAGGATCACGTTGACGCCATGCCGCCCACCACCACCACCACTACCACCACGAATCTGATATCCGAACCTCCAACTAACTTCGGACCCACCAGAAGAAAACCCAGAAACCACGAGAAGCAGCAAGAATCGACATTAATGCCGTTAAACCACGTGGAGGCCGAGAGGCAGAGACGAGAGAGGCTGAACCAGAGGTTCTACGCGCTCCGATCTGCCGTCCCCAACGTGTCGAAGATGGACAAGGCGTCTCTGCTATCCGACGCCGTAACGTACATCGGCGAGCTCAAGGCTAAAGTGGATGAGCTAGAGGGAAGACTGAAGGTGTATACGAACAAGTCGAAGGAAGAAGAAGGTGGGAATACGGTCTTGATGCAGTCGACTTCGAGTAGCGGGAGGAGTAGTACTGGGGTGGGGGTGGGGGTGGAGGTGAATATTGTGGGGACGGAGGCGATGATAAGGGTTCAGTGCGTGGATGTGAACCACCCGGCGGCGAGGTTGATGGACGCTCTGAGACACCTGGATCTGCATATTCACCATGCCAGCGTATCGAGGGTGAAGGACTTGATGCTGCAAGATGTTGTGGTTAGGGTTCCTCCTAACTTCATGACTGCCGAAGCCTTGAAATATGCCATTGCACAGAGGTTACACTACTGA 1173 0.5465 MGQEASTTLQHRLQYILHSRSEWWVYTIFWRASSKRTDHSDRSQSLLNWGDGHFRGKSHSTTSHQQFRFPDWGEGDHVRELEWFYTASVTQSFLEGLGVVGRAFTSATHVWFAGEKQLIRSQECERVREAATHGIKTLVFIPTECGVLELASADLIPQDWSLLRLVKTVFDDQFEDHVDAMPPTTTTTTTTNLISEPPTNFGPTRRKPRNHEKQQESTLMPLNHVEAERQRRERLNQRFYALRSAVPNVSKMDKASLLSDAVTYIGELKAKVDELEGRLKVYTNKSKEEEGGNTVLMQSTSSSGRSSTGVGVGVEVNIVGTEAMIRVQCVDVNHPAARLMDALRHLDLHIHHASVSRVKDLMLQDVVVRVPPNFMTAEALKYAIAQRLHY 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1353 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 219 268 IPR011598 GO:0046983
Bisa01g1353 390 MobiDBLite consensus disorder prediction 180 199 - -
Bisa01g1353 390 SMART finulus 225 274 IPR011598 GO:0046983
Bisa01g1353 390 MobiDBLite consensus disorder prediction 180 227 - -
Bisa01g1353 390 Coils Coil 265 285 - -
Bisa01g1353 390 Gene3D - 209 284 IPR036638 GO:0046983
Bisa01g1353 390 Pfam Helix-loop-helix DNA-binding domain 223 268 IPR011598 GO:0046983
Bisa01g1353 390 PANTHER MYC 6 387 IPR045084 GO:0003700|GO:0006355
Bisa01g1353 390 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 170 IPR025610 -
Bisa01g1353 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 282 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1353 Bisa-ChrBisa01 22493758 22494930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1353 9 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 36.341 2.80e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa01g1353 bHLH-MYC_N 6.8e-37 CL0161