Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1300 ATGGCGTTTTACATCAACAAATCTAACGACGTGATCAAAGTCCACTTTGGTCATTCTTCGGACCCGATTCACACTGAAATCAGTCCCAAGCCGTGGCAGCCACCGCCTTCGCTGCATCCTTTGTTCCGAGTTCCGACCACCGTTGACCCATCCCCATCAATGGGAAACTGCAGCGGCATATCCTCCGGTCAAAACCAACAAGACTCCGACGCCACCTATTCCGGCGGCCCTCGCCACCAATCCAACAATGGCCTCTCCGTCGTCCCTCCTAATTCCAATCCCTCTCCCTCGCCTCCACTTCCTAAACCATCTCACTCCTCTTCCGTGGGCCGCGTCCTTGGCCGACCCAGGGAGGACGTGCGATCCACCTATATCTTCGGCCGCGAACTAGGTCGCGGTCAATTTGGTGTCACCTACTTAGTCACCCATAAAGTCACTAAGGAACAATTTGCCTGCAAATCCATCGCCACCCGCAGATTGATTCATCATGACGATATGGATGACATCCGGCGTGAGGTCCAGATCATGTACCACCTCACTGGTCATCGCAACATTGTGGAGCTCAAGGGAGCTTACGAGGACAGACATTCTGTTAATTTAATCATGGAGCTCTGCGCTGGCGGGGAGCTCTTCGATAGGATAATAGCCAAGGGGCATTACTCGGAGCGAGCCGCTGCAAACTTGTGTCGCCAGATCGTGACGGTGGTGCATAATTGTCACTCCATGGGAGTAATGCATAGAGATTTGAAGCCTGAAAATTTCTTGTTCCTTAGTAAGGACGAGAATTCACCGCTAAAGGCCACTGATTTTGGTCTTTCCGTATTTTTCAAGCCGGGAGATGTATTTAAAGATCTTGTTGGGAGTGCATATTATGTTGCTCCTGAGGTGCTGCGTAGAAACTATGGACCCGAAGCTGATATTTGGAGTGCTGGGGTTATATTATACATTCTTCTCTGTGGTGTCCCACCCTTCTGGGCAGAAAATGAGCAGGGCATCTTCAATGCTATTCTTCGTGGACATATTGATTTTGTATCAGATCCTTGGCCTTCCATCTCAAGTAGCGCCAAGGATCTGGTTAAGAAGATGCTACGAGCTGACGCAAAAGAACGGCTTTCTGCAGCTGAAGTCTTAGATCATCCTTGGATGAGAGAAGATGGCGATGCATCTGATAAGCCTCTTGATATTGCTGTTTTAACCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAGAAAGTAGCTTTGAAGGTAATTGCAGAAAATCTTTCTGAAGAAGAGATCATTGGCTTAAAGGAAATGTTCAAATCCATGGACACAGATAACAGTGGCACAATCACCTATGATGAGTTAAAAGCTGGTCTCCCCAAACTGGGTACTAAGCTTTCTGAGTCTGAAATTAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAATGGAGCCATTGATTATATTGAATTTATAACGGCTACCATGCACATGAATAGAATTGAAAGAGAGGACCACCTATACAAAGCCTTTGAATATTTTGACAAGGATAAGAGCGGTTACATCACAAAGGAAGAGTTGGAAACTGCCCTTAAGAAGTATAACATGGGTGATGAGAAAACAATAAAGGAGATCATTGCTGAAGTTGACACAGACAATGATGGAAGAATTAACTACGAAGAGTTTGCGGCCATGATGAGGAAAGGCAACCCGGACTTGGTAAACAACAGACGACGCAAATGA 1728 0.4659 MAFYINKSNDVIKVHFGHSSDPIHTEISPKPWQPPPSLHPLFRVPTTVDPSPSMGNCSGISSGQNQQDSDATYSGGPRHQSNNGLSVVPPNSNPSPSPPLPKPSHSSSVGRVLGRPREDVRSTYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRRLIHHDDMDDIRREVQIMYHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAANLCRQIVTVVHNCHSMGVMHRDLKPENFLFLSKDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRNYGPEADIWSAGVILYILLCGVPPFWAENEQGIFNAILRGHIDFVSDPWPSISSSAKDLVKKMLRADAKERLSAAEVLDHPWMREDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITYDELKAGLPKLGTKLSESEIRQLMEAADVDGNGAIDYIEFITATMHMNRIEREDHLYKAFEYFDKDKSGYITKEELETALKKYNMGDEKTIKEIIAEVDTDNDGRINYEEFAAMMRKGNPDLVNNRRRK 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1300 575 Gene3D - 394 565 - -
Bisa01g1300 575 PANTHER SERINE/THREONINE-PROTEIN KINASE 119 557 - -
Bisa01g1300 575 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Bisa01g1300 575 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Bisa01g1300 575 Gene3D Phosphorylase Kinase; domain 1 126 209 - -
Bisa01g1300 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Bisa01g1300 575 CDD EFh 504 562 IPR002048 GO:0005509
Bisa01g1300 575 FunFam calcium-dependent protein kinase 1 210 389 - -
Bisa01g1300 575 Pfam EF-hand domain pair 500 562 IPR002048 GO:0005509
Bisa01g1300 575 Pfam EF-hand domain pair 430 490 IPR002048 GO:0005509
Bisa01g1300 575 CDD STKc_CAMK 124 381 - -
Bisa01g1300 575 SUPERFAMILY Protein kinase-like (PK-like) 98 404 IPR011009 -
Bisa01g1300 575 FunFam Calcium-dependent protein kinase 1 126 209 - -
Bisa01g1300 575 ProSitePatterns EF-hand calcium-binding domain. 545 557 IPR018247 -
Bisa01g1300 575 SUPERFAMILY EF-hand 421 562 IPR011992 -
Bisa01g1300 575 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Bisa01g1300 575 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Bisa01g1300 575 Gene3D Transferase(Phosphotransferase) domain 1 210 393 - -
Bisa01g1300 575 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Bisa01g1300 575 MobiDBLite consensus disorder prediction 21 114 - -
Bisa01g1300 575 ProSiteProfiles Protein kinase domain profile. 124 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g1300 575 ProSiteProfiles EF-hand calcium-binding domain profile. 533 567 IPR002048 GO:0005509
Bisa01g1300 575 Pfam Protein kinase domain 126 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g1300 575 SMART serkin_6 124 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g1300 575 ProSiteProfiles EF-hand calcium-binding domain profile. 497 532 IPR002048 GO:0005509
Bisa01g1300 575 MobiDBLite consensus disorder prediction 49 90 - -
Bisa01g1300 575 SMART efh_1 429 457 IPR002048 GO:0005509
Bisa01g1300 575 SMART efh_1 536 564 IPR002048 GO:0005509
Bisa01g1300 575 SMART efh_1 465 493 IPR002048 GO:0005509
Bisa01g1300 575 SMART efh_1 501 529 IPR002048 GO:0005509
Bisa01g1300 575 FunFam Calcium-dependent protein kinase 1 390 565 - -
Bisa01g1300 575 ProSitePatterns EF-hand calcium-binding domain. 510 522 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1300 Bisa-ChrBisa01 21540820 21547665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1300 110 574 EF-hand Containing Proteins AT4G23650 82.151 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bisa01g1300 Pkinase 4.1e-72 CL0016