LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g1283	ATGTGTGAACAGAAATCGAGGGAGATGGTATCATCATCGGGTGGATTCTGCTACTCGGACGTATCAGCAGGCAACCCGTCAGGGATTCAAGCCCATCTGGGGAATCAGATCCCAGGTTTCGTGTCCGTGTCTGACCCGGAAATGTTCAACCTCACCACAAGCCTGGACATGATAGGCTTCTCCAAGAATCTTCACCAACAAACTGACACCACCAACGCCCTCATGTGGAAAAGTTTCCTGGGCAAACCCGGACACAATCCGGGCCCTTCCTCTTCCAGGACCATGAACGACTCAGCTCACGCCAATTTCTATCATCCCAGTGAGTACCCCAAGCCAGATTTCACATCTGGGATTTCTGAAACCAGCAGCGACAATCTAATTATGGGAGGACCTCAACCTCAACCTCATCATCATGATTCTTCCACTAACTGGCAAGACAACAGATCGTTACTCGTTGATGATTCTTCTTTTAGATGTGTGTTCCCTTGCGAAGGAAACGAAAGGCCCAGTCAAGGCCTTTCCCTGTCCCTCAGTTCAGCCAATCCCTTGAGCATCGGGTTACAGTCGTTTGAGCTAAGACACACCAACAATAACCATCCTCATCAGCACCAAACGGACTTTGTTTCTTCGTCAAGTAGAGACAAGTCGTTGTTGGGAAAATCAGTGAATCCTCAACACGAGGCAAATCTGTATCAGGGTCATTTCCTGCTCAAGAACTCCAAGTATCTGGTCGCCGCACAGGAACTCCTCAACGAGTTTTGCAGTCTGGGAACAAAGCAAAACGAAATCCCACTAAAGCAAAAGTCCACCCAGAAAACCAAGCAGTGGGATGATGACAACGTTAACGGTGGGAGTTCCTCTAAGAAACATCCCCTTGGCTCCCTAGAGTTTGTCGAATTGCAGAAGAGAAAGACCAAACTGCTTTCCATGCTCGAAGAGGTTGAGAGGAGGTACAGGCACTACTGCAATCAGATGAAGGGGGTGGTGTCGTCGTTTGAGGCGGTGGCGGGGAATGGGGCGGCGAGGGTGTACTCGGCGCTGGCACTGAAGGCGATGTCGAGGCATTTCAGGTGTTTGAAGGATGGGATAATGGGGGAGATAGAGACGACGAGGAGAAGCATGGGAGAGAAGGACCCAATTGCACCTGGAACCACAAAGGGAGAAACCCCAAGGCTCAAAATCATAGACCAAGCACTCAGACAACAGAGGGCCTTCCAGCAAATGAGCCTCATGGAGTCCCACCCTTGGCGACCCCAGCGTGGCCTTCCCGAGCGATCCGTATCTGTTCTTCGAGCTTGGCTTTTCGAGCATTTTCTCCATCCGTACCCAAGCGATATGGATAAACACATCTTAGCCCGCCAAACAGGTCTCTCAAGAAGTCAGGTATCAAATTGGTTTATTAATGCGAGGGTGAGGCTTTGGAAGCCAATGGTGGAAGAGATGTACATGGAAGAGCAGAAGGAGGACGAGAACAACAACATGGCTTCCTCTGAGGAGGTCACTGACCCAGCAGTCGACGACGTCAACGCCGGCCGGAATATCAAAAACCCAGGTCCGTCCCGCCTCGAAGATGAGAAGCCATTACAGGACCACCGACGACTGCTCCGAATAGACTCCGAGTGCGTGTCTTCCATCATAAACAACCACCCCGACCACAAGAACGACACCACCAAGAACCAAGAGCAGCAATGCACATTTGGATCCGTAGAGCTTGATTTCTCGTCATATGGCCACCACTCAGGTGGAATGGTGTCGTACAATAACAACGAGAACGGGAGTAATCAGAATTATAAAAGTGGGGGAGTGTCGTTGACGCTAGGGTTACAGCAACATGGAGGGAGTGGGGTGAGTTTGGCGTTTCCTCCACCATCTCAGGCTTCTCTCTACTATTCGAGGGACCAAATGGAGGATTGTCAACCTGTGGTTCAGTACTCGCTTTTGGATGCAGAGCATCAAACTCTTCCCTACAGGAATTTGATGGGGGCACAGTTGCTCCATGACTTGGCAGGATAG	2013	0.5052	MCEQKSREMVSSSGGFCYSDVSAGNPSGIQAHLGNQIPGFVSVSDPEMFNLTTSLDMIGFSKNLHQQTDTTNALMWKSFLGKPGHNPGPSSSRTMNDSAHANFYHPSEYPKPDFTSGISETSSDNLIMGGPQPQPHHHDSSTNWQDNRSLLVDDSSFRCVFPCEGNERPSQGLSLSLSSANPLSIGLQSFELRHTNNNHPHQHQTDFVSSSSRDKSLLGKSVNPQHEANLYQGHFLLKNSKYLVAAQELLNEFCSLGTKQNEIPLKQKSTQKTKQWDDDNVNGGSSSKKHPLGSLEFVELQKRKTKLLSMLEEVERRYRHYCNQMKGVVSSFEAVAGNGAARVYSALALKAMSRHFRCLKDGIMGEIETTRRSMGEKDPIAPGTTKGETPRLKIIDQALRQQRAFQQMSLMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDMDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYMEEQKEDENNNMASSEEVTDPAVDDVNAGRNIKNPGPSRLEDEKPLQDHRRLLRIDSECVSSIINNHPDHKNDTTKNQEQQCTFGSVELDFSSYGHHSGGMVSYNNNENGSNQNYKSGGVSLTLGLQQHGGSGVSLAFPPPSQASLYYSRDQMEDCQPVVQYSLLDAEHQTLPYRNLMGAQLLHDLAG	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g1283	670	MobiDBLite	consensus disorder prediction	85	101	-	-
	Bisa01g1283	670	Pfam	Associated with HOX	237	363	IPR006563	-
	Bisa01g1283	670	MobiDBLite	consensus disorder prediction	114	145	-	-
	Bisa01g1283	670	MobiDBLite	consensus disorder prediction	489	528	-	-
	Bisa01g1283	670	SUPERFAMILY	Homeodomain-like	417	483	IPR009057	-
	Bisa01g1283	670	Gene3D	-	411	491	-	-
	Bisa01g1283	670	MobiDBLite	consensus disorder prediction	196	219	-	-
	Bisa01g1283	670	MobiDBLite	consensus disorder prediction	81	145	-	-
	Bisa01g1283	670	MobiDBLite	consensus disorder prediction	265	289	-	-
	Bisa01g1283	670	Pfam	Homeobox KN domain	433	472	IPR008422	GO:0003677\|GO:0006355
	Bisa01g1283	670	SMART	HOX_1	416	480	IPR001356	GO:0003677
	Bisa01g1283	670	Coils	Coil	297	317	-	-
	Bisa01g1283	670	ProSiteProfiles	'Homeobox' domain profile.	413	476	IPR001356	GO:0003677
	Bisa01g1283	670	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	142	495	-	-
	Bisa01g1283	670	MobiDBLite	consensus disorder prediction	265	290	-	-
	Bisa01g1283	670	SMART	prehox3	231	365	IPR006563	-
	Bisa01g1283	670	CDD	homeodomain	416	477	IPR001356	GO:0003677
	Bisa01g1283	670	FunFam	BEL1-like homeodomain protein 4	419	481	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g1283	Bisa-ChrBisa01	21353357	21356310	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g1283	146	669	Homeobox Transcription Factor Family	AT5G41410	46.503	9.06e-135	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Bisa01g1283		POX	1.9e-47	No_clan