Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1226 ATGTCGTCAACTAGGTCAGTGAACCGTTCCTCCGAGGACATCCTCGATTCAACGCCGTTCCTGGGGAATTCAGGTGGCTCATCTGATGAATTTAGTTCTGGCCGTCGATTCGTGCGGAGGCAGAGCTTGCGCCAAGCTGCACGGTTTCTCAGGCAGGCCAGTAGCCGCAGGATGATGCGTGAGCCGTCGATGCTGGTTAGAGAGACAGCGGCCGAGCAATTGGAAGAGAGACAGAGCGATTGGGCTTATTCCAAGCCTGTCGTGATTCTTGATATTATTTGGAACTTTGCTTTTGTCATCGTGGCCGCTACAGTATTGGTGTTGAGTCGAAATGAATCACCGAGCATGCCTCTGAGGATGTGGATTGTGGGTTATGCTCTGCAATGTGTCCTCCACATGTTCTGTGTTTGCGTTGAATACCGGAGGAGGCGGCGGTACCAGCGCATCCAATCTTCTCCATCCTCAAACATGGTGCAAGAAAGGTTTGACAGCGGTGACAATTTGAGTTCCGGTTCAAGGGAGGGTTCTGGGCATTATGGGACATCGCCGCATTTCGAGGAGGAGGGCACAAGTGTCGCAAAGCATCTAGAATCAGCCAATACAATGTTTTCATTTATTTGGTGGATCGTTGGATTTTACTGGGTGTCCGCCGGCAGTCAAACTTTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGTATAATTTTCCTGGCTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCGCTGGCATGCATAATTGGCATTGCTGTTTTCTGTTGTCTTCCATGTATCATTGCTCTTCTTTATGCAGTTGGAGACCAGGAGGGGGCATCAAAACAAGATATTGAGCAGTTGTCAAAATTTCAATTCCGAAGAATAGACAATGAGAAAGTTGCCGGTAGTGCACAAGGACCTGTTGGAGGAATTATGACTGAATGTGGCTCTGATTTGCCAACTGAACGAATTCTTTCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCCTCTTATGATGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTCCCTGTGTGGATAAGTGGCTGTATATTAACGCTACTTGTCCCCTGTGCAAGTATAACATTTTGAAGAGTACCGGCCATGGTGAAGAGGAAGTATAG 1161 0.4746 MSSTRSVNRSSEDILDSTPFLGNSGGSSDEFSSGRRFVRRQSLRQAARFLRQASSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIIWNFAFVIVAATVLVLSRNESPSMPLRMWIVGYALQCVLHMFCVCVEYRRRRRYQRIQSSPSSNMVQERFDSGDNLSSGSREGSGHYGTSPHFEEEGTSVAKHLESANTMFSFIWWIVGFYWVSAGSQTLAQDSPQLYWLCIIFLAFDVFFVVFCVALACIIGIAVFCCLPCIIALLYAVGDQEGASKQDIEQLSKFQFRRIDNEKVAGSAQGPVGGIMTECGSDLPTERILSEEDAECCICLSSYDDGVELRELPCGHHFHCPCVDKWLYINATCPLCKYNILKSTGHGEEEV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1226 386 FunFam E3 ubiquitin-protein ligase At1g12760 317 382 - -
Bisa01g1226 386 CDD RING-H2_RNF6-like 330 372 - -
Bisa01g1226 386 MobiDBLite consensus disorder prediction 1 31 - -
Bisa01g1226 386 SMART ring_2 331 371 IPR001841 -
Bisa01g1226 386 SUPERFAMILY RING/U-box 321 379 - -
Bisa01g1226 386 PANTHER TARGET OF ERK KINASE MPK-1 53 376 - -
Bisa01g1226 386 MobiDBLite consensus disorder prediction 1 33 - -
Bisa01g1226 386 ProSiteProfiles Zinc finger RING-type profile. 331 372 IPR001841 -
Bisa01g1226 386 MobiDBLite consensus disorder prediction 151 186 - -
Bisa01g1226 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 379 IPR013083 -
Bisa01g1226 386 MobiDBLite consensus disorder prediction 151 177 - -
Bisa01g1226 386 Pfam Ring finger domain 330 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1226 Bisa-ChrBisa01 20523967 20530056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1226 24 379 C3H Transcription Factor Family AT1G68070 47.632 4.01e-114 335