Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa01g1205 | ATGCAAGAAGCAGGGTTGGGAATGATGGGTGGTGGTCTGAGCGGAGAAGTGTCTCCGTCCGGCGAACTCCACCGGCAACTGAAGGCGGAGATAGCGACGCACCCACTGTGCGAGCAGCTTCTAGCGGCGCATGTGGGATGCCTCCGCGTCGCCACTCCGATCGATCAGCTTCCACTCATCGATGCTCAGTTATCACAGTCTCATCATCTTCTACGCTCTTGTGCCTCCCTTCACACCCATTCCCTTTCGCCTCACGACCGTCAAGAGCTCGACAACTTCCTGGCACAATATTTGATAGTGCTGTGTAATTTCAAAGAGCAGCTTCAGCAACATGTCAGAGTTCATGCCGTTGAGGCTGTCATGGCTTGCCGTGATATTGAAAATACCTTACAAGCTCTCACAGGAGTAAGCTTGGGAGAAGGAAGTGGGGCAACAATGTCAGATGATGAAGACGATTTGGCGATGGAATTGTCAATGGATCACTCAGGCGGCGTTGAAGGGCATGACATGATGGGTTTTGGTCCATTGCTTCCCACAGAATCTGAAAGGTCGCTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTGAGAGAGGAAATTCTGAGGAAACGAAGAGCTGGGAAATTACCAGGTGACACGACTTCGGTGTTAAAGAACTGGTGGCAGCAACATGCTAAGTGGCCCTACCCTACTGAAGATGACAAGGCGAAACTAGTGGAGGAAACAGGGTTGCAGCTGAAGCAGATTAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAACAACTCTCAGTCCGTCACCTCTTTGAAGTCCAAGCGCAAGAGGTAG | 870 | 0.4989 | MQEAGLGMMGGGLSGEVSPSGELHRQLKAEIATHPLCEQLLAAHVGCLRVATPIDQLPLIDAQLSQSHHLLRSCASLHTHSLSPHDRQELDNFLAQYLIVLCNFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDLAMELSMDHSGGVEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSQSVTSLKSKRKR | 289 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa01g1205 | 289 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 213 | 274 | - | - | |
| Bisa01g1205 | 289 | SUPERFAMILY | Homeodomain-like | 214 | 279 | IPR009057 | - | |
| Bisa01g1205 | 289 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Bisa01g1205 | 289 | Pfam | KNOX1 domain | 27 | 68 | IPR005540 | GO:0003677|GO:0005634 | |
| Bisa01g1205 | 289 | ProSiteProfiles | 'Homeobox' domain profile. | 212 | 275 | IPR001356 | GO:0003677 | |
| Bisa01g1205 | 289 | Gene3D | - | 211 | 285 | - | - | |
| Bisa01g1205 | 289 | SMART | HOX_1 | 214 | 279 | IPR001356 | GO:0003677 | |
| Bisa01g1205 | 289 | CDD | homeodomain | 215 | 276 | IPR001356 | GO:0003677 | |
| Bisa01g1205 | 289 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 85 | 275 | - | - | |
| Bisa01g1205 | 289 | SMART | KNOX2_2 | 80 | 135 | IPR005541 | GO:0003677|GO:0005634 | |
| Bisa01g1205 | 289 | ProSiteProfiles | ELK domain profile. | 192 | 212 | IPR005539 | GO:0003677 | |
| Bisa01g1205 | 289 | Pfam | Homeobox KN domain | 232 | 271 | IPR008422 | GO:0003677|GO:0006355 | |
| Bisa01g1205 | 289 | SMART | KNOX1_2 | 25 | 69 | IPR005540 | GO:0003677|GO:0005634 | |
| Bisa01g1205 | 289 | Pfam | KNOX2 domain | 83 | 134 | IPR005541 | GO:0003677|GO:0005634 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa01g1205 | Bisa-ChrBisa01 | 20085286 | 20090437 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa01g1205 | 1 | 288 | Homeobox Transcription Factor Family | AT1G62990 | 80.822 | 6.11e-172 | 475 |
Transcription factors information