Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1203 ATGGTGAGAGGGAAAACTCAGATGAAACGAATAGAAAATGACACAAGCAGGCAAGTGACGTTCTCAAAACGGAGAAATGGGCTGCTTAAGAAGGCCTTCGAGCTGTCAGTGTTGTGTGATGCTGAAGTTGCACTCATCATCTTCTCTCCCAGAGGCAAGCTCTATGAATTCTCCAGTTCTAGTGTAAACAAAACAGTTGAACGCTATCAAAGGAAAGTCAGGGACCTGGATCTCTGCACCAAAGAAGACAACACACAGCATGTGAATAAGGACGGTGGCATCAGCATGGCAAAGAAGCTTGAGCATTTAGAGGAATCTAAAAGGAAGCTCTTGGGAGATTGTTTGGATGCATGTTCTGTTGAGGAGTTAAGTCAAATAGAGAACCAGTTAGAACGAAGCTTAACCAAAATTAGGGCAAGAAAGATTGAATTGTTCAGAGAGCATATCGAGAAACTAAGGGAAGAGGAAAAGCGCCTTCTGCAAGAAAATAAAAAGTTACGGGAGCAGTGTGGGGTTGAAGAGCGAGGTTCAAGGAATGAAGAGGATGTGGGGGTGGTGGACGAGGTGGAGACGGAGTTGTTCATAGGGCTTAAAACTCGCAACGCTTGA 609 0.4466 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSVNKTVERYQRKVRDLDLCTKEDNTQHVNKDGGISMAKKLEHLEESKRKLLGDCLDACSVEELSQIENQLERSLTKIRARKIELFREHIEKLREEEKRLLQENKKLREQCGVEERGSRNEEDVGVVDEVETELFIGLKTRNA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1203 202 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa01g1203 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa01g1203 202 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Bisa01g1203 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa01g1203 202 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Bisa01g1203 202 Coils Coil 120 140 - -
Bisa01g1203 202 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa01g1203 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Bisa01g1203 202 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Bisa01g1203 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa01g1203 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa01g1203 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa01g1203 202 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Bisa01g1203 202 Coils Coil 142 169 - -
Bisa01g1203 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa01g1203 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1203 Bisa-ChrBisa01 20004153 20009019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1203 1 196 MADS-box Gene Family AT4G22950 59.512 1.48e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa01g1203 K-box 9.5e-23 No_clan