Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1171 ATGGATTCAGTTCATGTCCTACTTTCTCTGTTTCTTGCATTGCTTGCATTTCCTAGCCCACAACCTGTTTGTGGGAATGCGGAGATTAGAGCACTGATAGAGTTGAAGACGTCTCTAGATCCAGAGGGCAAGTTCCTTGGATCGTGGAGCAGTGATGGTGACCCGTGCGGTGGTTCGTTTGTAGGGATAGCATGCAACGAGCACAGGAAAGTGGCCAACATTTCGTTGCAGGGAAAGGGGCTTTCGGGATGGATATCACCTGCAGTGGCTGACCTCAAATGTTTGTCAGGTTTATACCTTCATTACAACAATCTCTCAGGGGAGATTCCCAGAGAGATTTCAAGTCTCACTGAATTGGTTGATCTTTATCTCAACGTGAATAATCTATCTGGAAACATTCCTCCTGAGCTTGGGAATATGCCTAGTCTCCAAGTGCTGCAGTTAGGTTATAACCAGTTGGTGGGGACTATACCTAAGGAGATGGGTTCCTTGAAGCAGCTTACTGCTCTAGAGTTGCAATGTAACAAATTGACTGGTCAAATTCCTCTAAGCTTGAGGAACTTGGAGAATCTAAGGATGCTTAATTTGAGCTTTAACAACTTCAATGGTATGATCCCCAGAAAACTTGCCGTTCTTGCAAATCTGCAAGTTCTAGACATTCAGAACAATTCTCTGTCAGGAATTGTTCCTCCTGCACTGAAGAAATTGAGGGATGGATTTCAATGTGCAAACAACCCGGGTTTATGTGGACTTGGGTTTTCTAATTTGAGATCTTGCAAAGATCAAGATCGGAAGGTTATTAACCAGTTTGACACCTCAGATCTACCCACAAAAAGTGTTCCTTCAAAGGAGTTTCCTGAGCCTGCAAATCTCCAGTTTTATTGTAACCAAACCCATTGCTCAAAATCAAGAAGGGTTCCTCAAACTGTAATTGCAGCGAGTGTTATAACTATCACTATCACATTCATGGGTGCTGGATTCTTGACTTTTGTCAGATACCGCCGCCAAAAGCAGAGAATTAGGAATACATCAGAATCTTCTGAAGGGCAACTTAGTCCAGACCAGCCTAAAGAGTTGTACAAAAGAAGTCCATCTCCACTAGTTAATCTTGAGTATTATAATGGATGGGATGCTCAAAATGGTAGTGGATTATCCCATGAGTATCTGAACCGTTATAGGTTTAATGTGGATGAGGTTGAATCTGCAACACAGTGCTTTTCTGAGGCCAACTTGTTGGGTAAGAGCAAATTATCAGCAGTCTACAAAGGGATTCTCAGAGATGGTTCTCTTGTCGCTATTAGAAGCATTAATGAAACATGCTGCAAAGCAGAGGAAGCTGAATTTGTAAGTGGGTTGAACTTAGTAACCTCACTGAGACATGAAAACCTAGTTAGGCTGAGAGGTTTCTGTTGCTCAAGAAGTAGAGGTGAATGTTTCCTCATCTATGACCTTGCTCCTAAGGGTGATCTGTCTCAATATCTTGACATAGATGATGCAAGTGGTCATGTTCTTGAGTGGTCCAAGAGGGTTTCTATAATCAAGGGCATTGCTAAAGGTATTGGATATCTACACAGCAATGAAACAAACAAACCGACAATAGTCCACCAAAATATTTCAGTGGAAAAAGTTGTGCTTGACCATCAGTTTAACCCGTTGATTATGGATTCTGGCCTCCCTAAGCTTCTTGCAGACGATGTTGTGTTCTCAGCTCTGAAAGTAAGTGCTGCCATGGGATACCTAGCTCCTGAATACATTACTACTGGCCGATTTACCGAGAAAAGTGACATATATGCATTCGGGGTTATAGTCCTTCAAGTTGTATCTGGGAAGAAAACAATAGGTGGTTCAATTAGGACGGCAGTTGAATCTTTCAGATTTGAAGATTTTGTTGACCCAAATCTGAAGGGAAGATATGCTAAATCTGAAGCAGCCATTCTTGCAAAGCTTGCTATAGCCTGCACCCATGAGCTTCCTGAGCAAAGGCCCACCATGGAGGAGGTTATTCAGGAGCTTGGGGCGTTTCCTGCGCAACATACTTCATCATCTGTTTCTTCCTATGCGTATTAA 2067 0.4257 MDSVHVLLSLFLALLAFPSPQPVCGNAEIRALIELKTSLDPEGKFLGSWSSDGDPCGGSFVGIACNEHRKVANISLQGKGLSGWISPAVADLKCLSGLYLHYNNLSGEIPREISSLTELVDLYLNVNNLSGNIPPELGNMPSLQVLQLGYNQLVGTIPKEMGSLKQLTALELQCNKLTGQIPLSLRNLENLRMLNLSFNNFNGMIPRKLAVLANLQVLDIQNNSLSGIVPPALKKLRDGFQCANNPGLCGLGFSNLRSCKDQDRKVINQFDTSDLPTKSVPSKEFPEPANLQFYCNQTHCSKSRRVPQTVIAASVITITITFMGAGFLTFVRYRRQKQRIRNTSESSEGQLSPDQPKELYKRSPSPLVNLEYYNGWDAQNGSGLSHEYLNRYRFNVDEVESATQCFSEANLLGKSKLSAVYKGILRDGSLVAIRSINETCCKAEEAEFVSGLNLVTSLRHENLVRLRGFCCSRSRGECFLIYDLAPKGDLSQYLDIDDASGHVLEWSKRVSIIKGIAKGIGYLHSNETNKPTIVHQNISVEKVVLDHQFNPLIMDSGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVVSGKKTIGGSIRTAVESFRFEDFVDPNLKGRYAKSEAAILAKLAIACTHELPEQRPTMEEVIQELGAFPAQHTSSSVSSYAY 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1171 688 SMART LRR_typ_2 188 211 IPR003591 -
Bisa01g1171 688 SMART LRR_typ_2 92 116 IPR003591 -
Bisa01g1171 688 SMART LRR_typ_2 140 164 IPR003591 -
Bisa01g1171 688 SMART LRR_typ_2 212 235 IPR003591 -
Bisa01g1171 688 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Bisa01g1171 688 Gene3D Phosphorylase Kinase; domain 1 377 484 - -
Bisa01g1171 688 FunFam Protein NSP-INTERACTING KINASE 2 485 675 - -
Bisa01g1171 688 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 308 672 - -
Bisa01g1171 688 FunFam Protein NSP-INTERACTING KINASE 2 377 484 - -
Bisa01g1171 688 Gene3D Transferase(Phosphotransferase) domain 1 485 681 - -
Bisa01g1171 688 SUPERFAMILY Protein kinase-like (PK-like) 383 671 IPR011009 -
Bisa01g1171 688 MobiDBLite consensus disorder prediction 339 361 - -
Bisa01g1171 688 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515
Bisa01g1171 688 ProSiteProfiles Protein kinase domain profile. 406 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g1171 688 Pfam Protein tyrosine and serine/threonine kinase 410 671 IPR001245 GO:0004672|GO:0006468
Bisa01g1171 688 FunFam Protein NSP-INTERACTING KINASE 2 25 174 - -
Bisa01g1171 688 Gene3D Ribonuclease Inhibitor 22 292 IPR032675 -
Bisa01g1171 688 SUPERFAMILY L domain-like 24 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1171 Bisa-ChrBisa01 19625724 19629440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1171 6 519 Miscellaneous Gene Families AT4G22730 58.523 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Bisa01g1171 PK_Tyr_Ser-Thr 3.4e-34 CL0016