Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1103 ATGGAGAAGCACAAATGCAAGCTCTGCTCCAGAACTTTCGCTAATGGCAGATCATTGGGCGGCCACATGAAGGCTCACTTGGCCACCCTCCCCCTCCCTCCCAAGCCTTCCCCTTCACCCTCATCCTCCTATTCCTTCTCGCAAGAACACGACGACGAATCAGACGAGAAGGCTCTGATTTACGAGCTAAGAGAGAATCCCAAGAAAAGCATCAAACTTGCAGATCCTGAGTTCTCCTTTGTTGATACCGGCTCCGTCGTCCAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCCACTCACCTTCGATCCAAGCGAGCCAGAACCCAGAGGCCCCAGCCCAAGAAGCCTAAAACCGCTTCCAACGACCCCCCGCTCGACCCCGAGCCGCTCAGCTCCGTCTCTGATACTTACACCGAGGAAGACCTCGCCATGTGCCTCATGATGCTCTCCAGGGACAAATGGAAGAGAAGCGTTGTGAAGCAAGATCAAGAAGAAGAGGAATCAAAGGGATTCGAGGAGATCAAGGTAAAGGGGGTTCGCGGGAGGCACCAGTGTGACAAGTGTAACAAGAGGTTTCGATCTTTCCGAGCATTGGGGAGTCACAGAAATATCTGCTTTCGCGATGAAGACGAAGCCCCAAGTGCAGGTAACGATAAGATTTTTGAGTGCCCATTTTGTGGTAAGGTGTTTGGGTCAGGACAGGCACTCGGTGGACACAAGAGATCTCACCTCGTACCATCTTCATCGTCAAATGCTAACTATTCCGGTAGACTAAAAGAGAGCGTTATAGATCTCAACTTGCCAGCCACAGCAGAAGAAGATGAACTCAGTGTGGTTTCTGATGCATAA 852 0.5129 MEKHKCKLCSRTFANGRSLGGHMKAHLATLPLPPKPSPSPSSSYSFSQEHDDESDEKALIYELRENPKKSIKLADPEFSFVDTGSVVQDRESETESKNPTHLRSKRARTQRPQPKKPKTASNDPPLDPEPLSSVSDTYTEEDLAMCLMMLSRDKWKRSVVKQDQEEEESKGFEEIKVKGVRGRHQCDKCNKRFRSFRALGSHRNICFRDEDEAPSAGNDKIFECPFCGKVFGSGQALGGHKRSHLVPSSSSNANYSGRLKESVIDLNLPATAEEDELSVVSDA 283
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1103 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 214 IPR013087 -
Bisa01g1103 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 244 IPR013087 -
Bisa01g1103 283 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Bisa01g1103 283 SUPERFAMILY beta-beta-alpha zinc fingers 184 244 IPR036236 -
Bisa01g1103 283 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 283 IPR044303 GO:0006355
Bisa01g1103 283 MobiDBLite consensus disorder prediction 72 134 - -
Bisa01g1103 283 MobiDBLite consensus disorder prediction 27 58 - -
Bisa01g1103 283 Pfam C2H2-type zinc finger 183 209 - -
Bisa01g1103 283 Pfam C2H2-type zinc finger 222 244 - -
Bisa01g1103 283 Pfam C2H2-type zinc finger 4 28 - -
Bisa01g1103 283 Gene3D Classic Zinc Finger 181 244 - -
Bisa01g1103 283 SMART c2h2final6 4 26 IPR013087 -
Bisa01g1103 283 SMART c2h2final6 222 244 IPR013087 -
Bisa01g1103 283 SMART c2h2final6 184 204 IPR013087 -
Bisa01g1103 283 ProSitePatterns Zinc finger C2H2 type domain signature. 224 244 IPR013087 -
Bisa01g1103 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Bisa01g1103 283 MobiDBLite consensus disorder prediction 88 102 - -
Bisa01g1103 283 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bisa01g1103 Bisa-ChrBisa01 18425259 18426110 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1103 1 280 C2H2 Transcription Factor Family AT3G60580 38.835 2.21e-53 174
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa01g1103 zf-C2H2_6 2.7e-06 CL0361