Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1078 ATGACTCGGCGATGCTCCCATTGCAGCAACAATGGCCATAACTCCAGGACCTGCCCCAACCGTGGAGTCAAGCTATTCGGAGTCCGATTGACTGATGGGTCCATCAGGAAGAGTGCCAGCATGGGCAATCTTAGCCACTATGCCGGGTCGACTTCGGGGCCCCATCAGGCCGGGGGTAACACTCCGGGTTCTCCCGGCGAGACGCCTGATCACGGTGCTGCCGCCGACGGTTACGCCTCCGAGGATTTTGTGCCTGGGTCGTCGTCGAGTTCCCGTGAAAGAAAGAAGGGTGTTCCATGGACTGAGGAGGAACATAGAATGTTTCTACTTGGACTGCAGAAGCTAGGCAAAGGTGATTGGCGTGGAATTGCAAGAAATTATGTTATATCAAGGACACCTACTCAAGTAGCCAGCCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTATCTAGGCGAAAAAGACGTTCAAGCTTGTTTGATATTGCTGCAGATGAAACAGCCGACACACCAATGGTACCCCAAGATTTCTTGTCAACCAATCAGCTAAAGGCTGAAGCAGAAGGCAAAAACCCTTTGCCTGATCCTCCAGCCCTTGATGAAGAGTGTGAATCCATGGATTCCACCAATTCAAATGATGGAGAGCCTGCCTCTTTAAAGCCAGACAGCTCACAACCATCTTACCCGCCGGTGCTATATCCCGCATACTTCTCTCCTGTCTTCCCTTTTCCTCTGCCCTATTGGTCAGGGTACATTCCAGAGCCTAATAAGAAGGAGGCACATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAGAGCCCGATCAATGTTGATGAACTTGTTGGTATGTCAAAGCTAAGTTTAGGAGACTCTATTGGTGACAATGGCCCCTCCTCTCTGTCACTTAAACTCCTTGAAGGACCCTCCAGACAGTCAGCTTTTCATGCAACTCCAGCATGTGATAGTTCCAACATCAATGGCAGTGCGATCCATGCAGTTTAA 1002 0.497 MTRRCSHCSNNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSTSGPHQAGGNTPGSPGETPDHGAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIAADETADTPMVPQDFLSTNQLKAEAEGKNPLPDPPALDEECESMDSTNSNDGEPASLKPDSSQPSYPPVLYPAYFSPVFPFPLPYWSGYIPEPNKKEAHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDNGPSSLSLKLLEGPSRQSAFHATPACDSSNINGSAIHAV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1078 333 SMART sant 96 146 IPR001005 -
Bisa01g1078 333 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Bisa01g1078 333 MobiDBLite consensus disorder prediction 185 225 - -
Bisa01g1078 333 FunFam transcription factor MYB1R1 98 149 - -
Bisa01g1078 333 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Bisa01g1078 333 MobiDBLite consensus disorder prediction 209 225 - -
Bisa01g1078 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Bisa01g1078 333 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Bisa01g1078 333 MobiDBLite consensus disorder prediction 41 101 - -
Bisa01g1078 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Bisa01g1078 333 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Bisa01g1078 333 MobiDBLite consensus disorder prediction 1 21 - -
Bisa01g1078 333 PANTHER TRANSCRIPTION FACTOR KUA1 3 272 - -
Bisa01g1078 333 CDD SANT 99 144 IPR001005 -
Bisa01g1078 333 MobiDBLite consensus disorder prediction 1 18 - -
Bisa01g1078 333 MobiDBLite consensus disorder prediction 41 63 - -
Bisa01g1078 333 Gene3D - 98 150 - -
Bisa01g1078 333 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1078 Bisa-ChrBisa01 18040414 18046138 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa01g1078 Myb_DNA-binding 1.2e-10 CL0123