Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1073 ATGCCTGCAAACAAAGATTTTGGTTTGAATCTCACCCTCAGCTTCCCTCACAATCTCATGTCTTCCGCTTCTTATCCCCCCAACAACCCCTCTTCCAACGACGCCTTATTACCCTCCTCAGATCGATGTTCTGAAGAGTGCAGAGGCGAAACGCGGTCGTTTCTGCAAGGGATCGACGTGAATCGATTGCCTTCGGAGGTCGATTGCGACGAGGAGGCGGGCGTTTCGTCTCCGAACAGCACGGTTTCGAGTGTCAGCGGGAAGCGAAGCGAGAGGGACGCACACAGTAGCGAGGAGCAAGACACGGACAGAGCTTGTTCTCGAGGAATCAGCGATGAAGAAGACAATGAAGCGTCGAGGAAGAAGCTCAGGCTCTCCAAAGACCAGTCCGCTATTCTTGAAGAGAGCTTCAAAGAGCATAATACTCTTAACCCCAAGCAAAAGTTGGCACTGGCCAAGCAGCTCGGGCTTCGACCAAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAGCAAACTGAGGTGGACTGCGAATTCTTGAAAAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGTTGCAGAAGGAGGTTCAAGAGCTGAGAGCACTGAAACTTTCCCCTCAATTTTACATGCATTTGACTCCACCGACAACCCTCACCATGTGTCCATCGTGTGAGAGGCTTGCCGATCGGCCCATCCCCATCGGCCCATGGGCAGCGGCGGCTCGCATCCCGCACCGGCCCTTCGATGCCCTCCGTCTCAGATCGTAG 789 0.5387 MPANKDFGLNLTLSFPHNLMSSASYPPNNPSSNDALLPSSDRCSEECRGETRSFLQGIDVNRLPSEVDCDEEAGVSSPNSTVSSVSGKRSERDAHSSEEQDTDRACSRGISDEEDNEASRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHLTPPTTLTMCPSCERLADRPIPIGPWAAAARIPHRPFDALRLRS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1073 262 PRINTS Lambda-repressor HTH signature 147 156 IPR000047 GO:0003677
Bisa01g1073 262 PRINTS Lambda-repressor HTH signature 156 172 IPR000047 GO:0003677
Bisa01g1073 262 MobiDBLite consensus disorder prediction 17 43 - -
Bisa01g1073 262 ProSiteProfiles 'Homeobox' domain profile. 116 176 IPR001356 GO:0003677
Bisa01g1073 262 Pfam Homeodomain 120 174 IPR001356 GO:0003677
Bisa01g1073 262 FunFam Homeobox-leucine zipper protein 18 107 181 - -
Bisa01g1073 262 SMART halz 176 219 IPR003106 GO:0006355|GO:0043565
Bisa01g1073 262 MobiDBLite consensus disorder prediction 88 123 - -
Bisa01g1073 262 Coils Coil 175 212 - -
Bisa01g1073 262 Gene3D - 124 174 - -
Bisa01g1073 262 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 33 236 - -
Bisa01g1073 262 Pfam Homeobox associated leucine zipper 176 210 IPR003106 GO:0006355|GO:0043565
Bisa01g1073 262 CDD homeodomain 120 177 IPR001356 GO:0003677
Bisa01g1073 262 MobiDBLite consensus disorder prediction 17 39 - -
Bisa01g1073 262 SMART HOX_1 118 180 IPR001356 GO:0003677
Bisa01g1073 262 SUPERFAMILY Homeodomain-like 110 177 IPR009057 -
Bisa01g1073 262 ProSitePatterns 'Homeobox' domain signature. 151 174 IPR017970 GO:0000981|GO:0006355
Bisa01g1073 262 MobiDBLite consensus disorder prediction 69 123 - -
Bisa01g1073 262 Pfam HD-ZIP protein N terminus 8 93 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1073 Bisa-ChrBisa01 17960633 17962044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1073 1 262 Homeobox Transcription Factor Family AT4G16780 62.630 2.60e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa01g1073 HD-ZIP_N 3.4e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1169 11 29965781 29967169 Bisa01g1073 01 17960633 17962044 CCT