LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g1024	ATGAAGTGTTTCTTCTTCAAAGAAAAATGTACCAGGAAAGAGTCAAAATCCGCCCCCGAATTGCAAAACGACAGGAAGAAGAAAAATCCGGCAGTGGATCGCGTGTGCAAGTCGACGAGTTCTGTACCGTCGCCAAGGAGCTTAACAGAATTGTACAAAGAGAAAGCAAAAGAGCAGGGTTTCAGAGTTTTCAGTTTGCAAGAGCTCATAGATGCAACAAATGGTTTCAATAGGATGCTCAAGATTGGAGAAGGTGGTTTTGGAAGCGTGTATAAAGGGACGATTAGGCCTCAAGATGGACGAGGTGATCCAATCCCAGTTGCCATAAAAAGGCTTAACACGCGAGGCTTCCAGGGGCATAAAGAATGGCTGGCAGAAGTTCAATTTCTTGGCATTGTGAATCACCCAAATCTGGTAAAACTTTTGGGATACTGCTCTGTAGATGGAGAAAGAGGAATCCAACGGTTGTTGGTGTATGAATACATGGCCAATAGGAGCCTAGAAGATCATCTTTTTAATCGGGGACTTCCCACCTTGCCTTGGAAAACAAGATTGCAGATCATGATTGGTGCTGCCCAAGGATTAGCTTATCTACACGAGGGATTGGAGGTTCAGGTGATATACCGAGATTTCAAGACTTCAAATGTTCTATTGGATGCGGACTTCCACCCAAAGCTCTCAGATTTCGGTCTTGCTAGGGAAGGTCCATCGGGTGATAATACTCACGTATCTACTGCGGTGGTTGGAACGCAAGGATATGCAGCCCCAGAATATATTGAAACAGGGCATCTGAAAGTTGAGTGTGACATTTACAGTTTCGGTGTGGTACTGTATGAGATCCTCACGGGGAGGAGGGCATTAGACAGAAATCGCCCAACAACAGAACAAAAGCTTATAGAATGGGTTAAACAGTATCCTGCTGACACTGGCAGATTCAGCATGATCATCGACCCACGTCTCAGAAACCAATTTTCCCCTGGTGCTATCCGCAAAGTTGCCAAGCTGGCTGACTCTTGCATAAAGAAGAATCCTCAGGATAGGCCAACCATGTCTCAGATAGTGGAAAGCTTGAAGCTAGCATTGCAGTATTCAGAGACCCCTGACACTTCTCAAAGTGCGACTCCTGAATCATCTCGATCTTCTTTGGTTCGAAAGGGTAAATAA	1164	0.451	MKCFFFKEKCTRKESKSAPELQNDRKKKNPAVDRVCKSTSSVPSPRSLTELYKEKAKEQGFRVFSLQELIDATNGFNRMLKIGEGGFGSVYKGTIRPQDGRGDPIPVAIKRLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGERGIQRLLVYEYMANRSLEDHLFNRGLPTLPWKTRLQIMIGAAQGLAYLHEGLEVQVIYRDFKTSNVLLDADFHPKLSDFGLAREGPSGDNTHVSTAVVGTQGYAAPEYIETGHLKVECDIYSFGVVLYEILTGRRALDRNRPTTEQKLIEWVKQYPADTGRFSMIIDPRLRNQFSPGAIRKVAKLADSCIKKNPQDRPTMSQIVESLKLALQYSETPDTSQSATPESSRSSLVRKGK	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g1024	387	MobiDBLite	consensus disorder prediction	14	33	-	-
	Bisa01g1024	387	CDD	STKc_IRAK	82	358	-	-
	Bisa01g1024	387	MobiDBLite	consensus disorder prediction	364	387	-	-
	Bisa01g1024	387	ProSitePatterns	Protein kinases ATP-binding region signature.	82	110	IPR017441	GO:0005524
	Bisa01g1024	387	Gene3D	Phosphorylase Kinase; domain 1	48	161	-	-
	Bisa01g1024	387	PANTHER	OS01G0588500 PROTEIN-RELATED	29	359	-	-
	Bisa01g1024	387	MobiDBLite	consensus disorder prediction	364	381	-	-
	Bisa01g1024	387	ProSiteProfiles	Protein kinase domain profile.	76	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g1024	387	Pfam	Protein kinase domain	78	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g1024	387	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	162	371	-	-
	Bisa01g1024	387	SUPERFAMILY	Protein kinase-like (PK-like)	54	357	IPR011009	-
	Bisa01g1024	387	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	206	218	IPR008271	GO:0004672\|GO:0006468
	Bisa01g1024	387	MobiDBLite	consensus disorder prediction	14	45	-	-
	Bisa01g1024	387	Gene3D	Transferase(Phosphotransferase) domain 1	162	380	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g1024	Bisa-ChrBisa01	17369353	17371759	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g1024	3	357	Glycoside Hydrolase	AT3G07070	41.873	9.74e-93	283

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Bisa01g1024		Pkinase	7.5e-47	CL0016