Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0988 ATGGATGCTGCTGTAAAACAGGTGGAAGATGAGGAGATGGTTGATGAGGCCTCAACAGAGGCAATCAGAGAGGAAACTCCTAAAATTGCAGCTACTCCAAAAGATCAAAAGCCCACATCAAAGAAAATATTTGTTGGAAACTTGTCATATAATGTTGGAAGGGCTGATTTGGTAAATTTATTTAAAGACTGTGGAGAGGTCGTTAATGTCCGTTTTGGTACAGATCGTGATGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTTAGCACAGAAGAAGCAGCACAAAAAGCCCTTAAGTTGAATGGGAATGAGCTGTTTAGACGCTATATCAGGATTGAGATAGCACGTGAAAAGGGTGCATATACCCCTGGAAGCAGGAACAACTCGTTTAAGGGGTTTTATACAACATTTGGAGAAGATGAGCCTAAAATTTCAGCTTCTCCAATAGAACAAAATGCCACATCGAAGACACTATTTGTTGGAAACTTGTCATATAGTGTTGAAAGGGCTGATTTGGGAATTTTTTTCAAAGATTGTGGAGAAATTGTTGACATCCGATTTGCTACAGATCGTGATGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTCGCCACCGAAAAAGCAGCACAAAATGCCCTTACATTGAATGGGAACGAACTGTTGAGACGTTCTGTCAGGCTTGATATAGCTCCTGAAAGGGGTGCATATTCCTGCAATAGCAACAGAAATGACTCACCCGAGAAGGGTGGAAGTGATCAGCTTCTAACAGTATTTGTAAAAGGTTCTGGTACATCATTAGGAAAAGATGAGCTAAAAATGCCAGCTATTCCAAAAGAACAAAATCTCACATCAAAGACAGTATTTGTTGGAAACTTGTCACATAGCGTGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTGTTGATATACGTTTCGCTACAGATCGTGAAGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTTGCCACAAAAGAAGCAGCACAAAATGTAAGCATTTGTCATGATGTAGTCCGCCTGTTTCTTTAG 1059 0.4013 MDAAVKQVEDEEMVDEASTEAIREETPKIAATPKDQKPTSKKIFVGNLSYNVGRADLVNLFKDCGEVVNVRFGTDRDGRFKGFGHVEFSTEEAAQKALKLNGNELFRRYIRIEIAREKGAYTPGSRNNSFKGFYTTFGEDEPKISASPIEQNATSKTLFVGNLSYSVERADLGIFFKDCGEIVDIRFATDRDGRFKGFGHVEFATEKAAQNALTLNGNELLRRSVRLDIAPERGAYSCNSNRNDSPEKGGSDQLLTVFVKGSGTSLGKDELKMPAIPKEQNLTSKTVFVGNLSHSVERADLENLFKDCGEIVDIRFATDREGRFKGFGHVEFATKEAAQNVSICHDVVRLFL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0988 352 SMART rrm1_1 42 113 IPR000504 GO:0003723
Bisa01g0988 352 SMART rrm1_1 286 351 IPR000504 GO:0003723
Bisa01g0988 352 SMART rrm1_1 157 228 IPR000504 GO:0003723
Bisa01g0988 352 MobiDBLite consensus disorder prediction 1 26 - -
Bisa01g0988 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 232 IPR000504 GO:0003723
Bisa01g0988 352 Gene3D - 240 343 IPR012677 -
Bisa01g0988 352 Gene3D - 135 239 IPR012677 -
Bisa01g0988 352 Gene3D - 2 128 IPR012677 -
Bisa01g0988 352 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 276 340 - -
Bisa01g0988 352 SUPERFAMILY RNA-binding domain, RBD 33 128 IPR035979 GO:0003676
Bisa01g0988 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 352 IPR000504 GO:0003723
Bisa01g0988 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 340 IPR000504 GO:0003723
Bisa01g0988 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 225 IPR000504 GO:0003723
Bisa01g0988 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Bisa01g0988 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Bisa01g0988 352 SUPERFAMILY RNA-binding domain, RBD 279 341 IPR035979 GO:0003676
Bisa01g0988 352 SUPERFAMILY RNA-binding domain, RBD 153 242 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0988 Bisa-ChrBisa01 16654128 16667331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0988 157 339 Eukaryotic Initiation Factors Gene Family AT4G34110 24.865 2.98e-09 56.6