LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g0985	ATGTACTTGAGGAGAATACAGTGCCGAGATCAGAGATGGGGTGTAGTGTTTCAGCCATCCAAATACTTTATTAGGCCAAGAAGCTATGCTTATGCATACTTCCAATCTCACAGCCCTAAAACTACTGTGGAAGAAAATGTTTCACATGATAGTATCATGACGGGACGTCTATTGGGCTCATTTTTATCTAGGTGTGCCTACTCAAGTAATAGTTGTACTGATGTGTACAGAAGGCCTAGTTTGCGTTTGAGAAGTACTCAGTTACGTCTCTACAGTTCAGAAAGTGATGGAAGAAATGCAAGTGAGGACAAACATGTAAATGTAAATGATGGAGTTAATTGTGATAAGGGAAAGAACCGGCTGGATAAGTTTGGGGAAGGTGCCCAGCTCTGTAATGCTCATGCTCGACTCGGGGCACAGGATCAAGAGGAGTGGCTCAATAATGAGAAGCTTTCCATTGAAAATAAAAGGAGAGAATCACCTTTTTTAACCAGAAGGGATAAGCTAAAAAACGAGGTTCTGAGAAGGGTTGTTCCCTGGGAGAAAATAAACATTTCATGGGACACATTTCCTTACTATATTCATGAAAATACCAAAAATCTTTTGGTGGAATGTGCTGCTTCCCAATTGAGACATAATAAGTGGGCTTCTTCTTATGGTGCTCGTCTCTCTTCTTCGAGTGGGAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTCTATCGGGAGAGATTAGTTAGGGCACTTGCACAAGATTTACAAGTCCCTTTGTTGGTGCTTGATAGCAACATCCTTGCTCCTTATTATATTGATGATGATTTATTGTCAGAAAGTGAGTCTGATGATGATAATGCAGAATCTGGGGAGGAGGGTTCTCTTGAGTCAGAGGATGAAGATGATAATGATGCCAGCAATGAAGAAGAATGGACTGGCAATACTGGTGAAAAGTCAGATGTGAGTGATAATGAAGAACATGATGCGCTTGCATCTGCTGAAGCAGCCCTTAAGAAGGTGAAAGAAGCTGTTCAGAAACTTGTTCCCTACAACATTGAAGACTTTGAAAAGAGATCACCTGAAGAATCAGAAAATTCTGAGTCAACCAAATCTGAGGATGTCAAGCCTTCTGATGAATCTCAATGCCAACTAAAGAAAGGTGACCGTGTGAAATACATTGGGCCATCTGGTCAAGTTGACGTTGGTAATAGGATCATACTGGGGAAGATACTGACATCCGATGGTCCAACTAATGCTTACACTATAATCCATGGCAGGGCTTTGTCAAATGGCCAACGGGGAGAGGTATATGAGGTGAATGGAGATCAAGTTGCTGTCATCTTGGATATGAGTGAAGATAAGGCAAAAGAGGGTGAGGTGAAGAAATCTAATGATGAACATACAGGACCACCACTTTATTGGGTTCATGTTAAGGATATTGAGCATGACCCTGATGCTCAAGCACAGGATTGCTACATGGCTATGGAGGCTCTGTCAGAGGTTTTGAATTCCCAACAACCTCTTATTGTCTATTTTCCAGACAGTTCACAGTGGTTGCATAAATCAGTTCCAAAGTCAAACAGAAAAGAGTTTTTTGGTAAGGTCCAAGAAATGTTTGACAAGTTGTCTGGCCCAGTTGTGTTGATTTGCGGACAAAACAAAAATCAGTCAGGATCAAAGGAGAAAAAGCAATTTACTATGATACTTCCACCCCCCATCGGACGCGTTGACTTTTGCCGTCCTAAGGCAAATCCTGTAAAACCAATTATCAATAAGCCTTCTGAAGCTATTGAGCACATTCATGAACCTCTTCTGAAACACTTGACCGAGGGACTTGGAGCGACAAAAAGAATGGATGATGATGAAATTCACAAGCTTTTCACTAATGTTTTGTGCATACATCTACCTAAGGAGGAAGATCAGCTTGGAACTTTTAAAAAACAGCTTGAGGAAGACAGGAAAATTGTGATTTCACGTAGTAGCTTGAATGAATTACATAAGGTACTTGAAGAACATGAACTATCCTGTTTGGACCTTTTGCATGTAAATACAGATGGTGTCATTTTGACAAAGCAAAAAGCTGAAAAAGTAGTGGGCTGGGCAAAAAATCATTACTTATCATCTTGCCTGCTTCCTTCTGTTAAAGGAGAACGATTGTGTCTGCCTCGTGAAAGGTCTTTTTGTCCTACGTTCATAGTTATCTTACAAAAAATGTCACAGAATCTTGCAAAGGATGAGTATGAGAGCAACTTCATTTCAGCTGTTGTACCATCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGCGCTCTTGAAGATGTGAAGATGGCACTTAATGAACTTGTCATCCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGAGGGAACTTGTTACGGTGGTTTGGAGATGCTGAGAAACTTACCAAAGCTCTGTTCTCCTTTGCTAGCAAGCTTGCTCCTGTCATCATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGCGGTGCTTTTGAGCATGAAGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTGAGGTCAAAAGAAAGCCAAAGAATCCTTATTCTTGGTGCAACGAACAGGCCTTTTGATCTTGATGACGCTGTTATTCGTCGCTTACCAAGAAGTGATTTGAAGAACCTCTGTATTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAGGAAGAAAAGGAGGGAATTTGCAGGAGTCCAACGGCATTAAGGCCTCTAAAGTTGGATGATTTTATTCAGTCAAAATCCAAGGTTGGTCCATCAGTGGCCTATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAATGAAATGTATGGAGAAGGCGGGAGTAGGACAAAATCTCCTACACTTGCTTCGCTTTCCGACTTGATATCACTTGGGCACTTCCCACAACGGAACAACCCACTTTGGCCTTACTTTGTAGCGATATTCTTCGCTTCGCTGGAGACACCGGACGCCTCCGTAGCCTCTCCCTGCGATTTGAATATGGAGACGAAGGAATTGCAATTTATTCACAGAGCTTCGTCGATTACAGCTCCATCGCATACTACACGATCCGGTAGCGGTGGCGTCTGTTTGATGAGGAACACATGGAAAGAGGAACAACACCCATCTTTCGTCAATTTTATCTCCGCTTTCCTCAGTGCGAATGATTTTCGCCTCAATTTTGTCCCAATTGCCCCAGACTTTATTTTCAATTGTGGGGGTTTATCTGTAGCCTTCGTTTTTGTGACAAACTGGGATCACAACGTGTCCCCTATCTTCAACAGAATTCAAAAACTCAAGATGCAGTTTGCACGTCTTTATGTTGCCGTCACCCTCCCAGGAAAGGAACAAATTGATTCATTTATTCAATCATACTTCAAATACGATATGGTGATTGGCAAGCCGACGTTTGTGCCGGTTCAAGACTTGGAGATGGGATTTGAAAAGATGGTAAAAATAGCACATTCTTTGGGAGTATGCAAGCAGCAGAGAATTGGAGAAAATTTGAAGGCCGAGGTCAGTTGCCTGACTCATATTCACTTAACATAA	3585	0.4206	MYLRRIQCRDQRWGVVFQPSKYFIRPRSYAYAYFQSHSPKTTVEENVSHDSIMTGRLLGSFLSRCAYSSNSCTDVYRRPSLRLRSTQLRLYSSESDGRNASEDKHVNVNDGVNCDKGKNRLDKFGEGAQLCNAHARLGAQDQEEWLNNEKLSIENKRRESPFLTRRDKLKNEVLRRVVPWEKINISWDTFPYYIHENTKNLLVECAASQLRHNKWASSYGARLSSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDSNILAPYYIDDDLLSESESDDDNAESGEEGSLESEDEDDNDASNEEEWTGNTGEKSDVSDNEEHDALASAEAALKKVKEAVQKLVPYNIEDFEKRSPEESENSESTKSEDVKPSDESQCQLKKGDRVKYIGPSGQVDVGNRIILGKILTSDGPTNAYTIIHGRALSNGQRGEVYEVNGDQVAVILDMSEDKAKEGEVKKSNDEHTGPPLYWVHVKDIEHDPDAQAQDCYMAMEALSEVLNSQQPLIVYFPDSSQWLHKSVPKSNRKEFFGKVQEMFDKLSGPVVLICGQNKNQSGSKEKKQFTMILPPPIGRVDFCRPKANPVKPIINKPSEAIEHIHEPLLKHLTEGLGATKRMDDDEIHKLFTNVLCIHLPKEEDQLGTFKKQLEEDRKIVISRSSLNELHKVLEEHELSCLDLLHVNTDGVILTKQKAEKVVGWAKNHYLSSCLLPSVKGERLCLPRERSFCPTFIVILQKMSQNLAKDEYESNFISAVVPSGEIGVKFDDIGALEDVKMALNELVILPMRRPELFSRGNLLRWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKESQRILILGATNRPFDLDDAVIRRLPRSDLKNLCIAAAYRPVQELLEEEKEGICRSPTALRPLKLDDFIQSKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPTLASLSDLISLGHFPQRNNPLWPYFVAIFFASLETPDASVASPCDLNMETKELQFIHRASSITAPSHTTRSGSGGVCLMRNTWKEEQHPSFVNFISAFLSANDFRLNFVPIAPDFIFNCGGLSVAFVFVTNWDHNVSPIFNRIQKLKMQFARLYVAVTLPGKEQIDSFIQSYFKYDMVIGKPTFVPVQDLEMGFEKMVKIAHSLGVCKQQRIGENLKAEVSCLTHIHLT	1194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g0985	1194	ProSitePatterns	AAA-protein family signature.	864	883	IPR003960	GO:0005524\|GO:0016887
	Bisa01g0985	1194	Gene3D	-	797	884	IPR027417	-
	Bisa01g0985	1194	Pfam	ATPase family associated with various cellular activities (AAA)	785	886	IPR003959	GO:0005524\|GO:0016887
	Bisa01g0985	1194	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	761	892	IPR027417	-
	Bisa01g0985	1194	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	887	964	-	-
	Bisa01g0985	1194	MobiDBLite	consensus disorder prediction	353	384	-	-
	Bisa01g0985	1194	MobiDBLite	consensus disorder prediction	309	326	-	-
	Bisa01g0985	1194	Gene3D	-	885	957	-	-
	Bisa01g0985	1194	MobiDBLite	consensus disorder prediction	275	306	-	-
	Bisa01g0985	1194	MobiDBLite	consensus disorder prediction	353	387	-	-
	Bisa01g0985	1194	MobiDBLite	consensus disorder prediction	275	326	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g0985	Bisa-ChrBisa01	16588480	16617300	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g0985	787	888	Calmodulin-binding Proteins	AT3G56690	30.392	2.69e-06	50.1