Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0917 ATGGCGGCGGCTGTTTCAGCACCGATGGCCCAGCCCAATGGTCCAATGTCGCCGGTGGGGGCCGCAGCGGCAGCGGCATTGTCACCAGGGCAGTTCGCAAATATGTCGCTGTATGTGGGTGATCTTGACACCAATGTGAATGAGGGGCAGCTCTATGATCTGTTCAGCCAAGTGGCCAATGTTGTCTCTATCAGGGTGTGCAGGGACCAGACCAGGCGATCCTCTCTTGGTTACGCTTATGTCAACTTTGCCAACGCTCAGGAAGCTGCTAATGCCATGGAACTTCTGAATTTTACCCCCCTTAATGGGAAACCCATTCGTATTATGTTCTCTCATCGAGATCCTAGCATTAGGAAAAGTGGATATGCTAATGTGTTCATTAAGAACCTGGACGCATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGGACTGTACTTTCCTGCAAAGTAGCTGTTGATAGCTGTGGTCAGTCCAGAGGGTACGGTTTTGTACAGTTTGACAACGACGAGTCTGCACAAAATGCCATCAAACAGTTGAATGGTATGTTGTTGAATGATAAACAAGTCTATGTTGGACTCTTTGTTCGGCGCCAAGAAAGGATTCGAGCAAATGGATCTCCGAAGTTCACTAATGTGTATGTGAAAAATTTTTCTGAAACATGTACTGATGAGGACCTTAAGAAGCAGTTTGGGCAATTTGGTAAAATAACTAGTGCAGTTGTCATGAAAGATTCAAATGGGAAGTCTCGATGTTTTGGTTTTGTTAATTTCGAAAGCCCTGATTCAGCAGCTGCTGCGGTTGAGAATTTAAATGGAACCACTGTCAATGATGACAATGTTTTATATGTCGGAAGAGCTCAGAGGAAGGCAGAAAGAGAGGCGGAGTTGAAAGCCAAATTTGAGCAGGAAAGAATTAGTCGATATGAGAAATTACAGGGTGCTAATTTATACTTGAAAAATCTTGATGACAGCATCAATGACGAAAAACTGAAGGACTTATTTTCTGAGTTTGGAACAATAACATCATGCAAGGTCATGCTTGATTCACATGGGCATAGCAAGGGTTCTGGTTTTGTGGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGATGATTGGTCGAAAGCCTCTTTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCCCTGCAGGCTCATTTTGCTCAGATCCGAGGACCTGGTGGAATTGGACCTCTGCCTGCTGCAATTCCTGGATATCATCCAGGGGCACCAAGACTTGCCCCTCAGCAGTTGTATTATGGTCAAGGTACACCTGGTCTGATACCACCTCAGCCAGCTGGATTTGGTTTCCAGCAGCAACTCTTGCCCGGAATGCGTCCAGGTGTTTCTCCAAATTTCATTATGCCATACCAGCTTCAGAGACAGGGTCAGCCTGGGCAAAGGATGGGAATTCGACGGGGTGGAAATCTCCAACATGTGCCACAGAATCAGATGCTGCATCGTAGCTCCAACCAAGGGTTTAGATATATGGGCAACAATCGGAATGGCATGGACCCATCTGTTGTTCCCCAAGGTCTAGTGGGTCCAATGATGCCATTGCCCTTTGATGGTTCTGGGGTTACTTCGGCTCCCATTGATAGTCAACGACCTGGTGCACTGTCTACAACACTTGCCTCAGCTTTGGCATCTGCTACACCAGAAAATCAGCGTATGATGTTGGGTGAACATCTATATCCCCTTGTAGAGCGTCTTGCACCAAACCATACAGCAAAGGTGACAGGGATGTTGCTGGAAATGGACCAATCTGAGGTTATCCATCTCATTGAATCTCCTGAGGACTTGAAGATAAAGGTGTCTGAGGCAATGCAAGTCCTTCATGAAGCTGCATCAGGTTCTGAAGTTGGTGATCAGCTCGGCTCGCTATCACTGAATGAATGA 1956 0.4627 MAAAVSAPMAQPNGPMSPVGAAAAAALSPGQFANMSLYVGDLDTNVNEGQLYDLFSQVANVVSIRVCRDQTRRSSLGYAYVNFANAQEAANAMELLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDASIDNKALHDTFAAFGTVLSCKVAVDSCGQSRGYGFVQFDNDESAQNAIKQLNGMLLNDKQVYVGLFVRRQERIRANGSPKFTNVYVKNFSETCTDEDLKKQFGQFGKITSAVVMKDSNGKSRCFGFVNFESPDSAAAAVENLNGTTVNDDNVLYVGRAQRKAEREAELKAKFEQERISRYEKLQGANLYLKNLDDSINDEKLKDLFSEFGTITSCKVMLDSHGHSKGSGFVAFSTPEEASKALNEMNGKMIGRKPLYVAVAQRKEERKALQAHFAQIRGPGGIGPLPAAIPGYHPGAPRLAPQQLYYGQGTPGLIPPQPAGFGFQQQLLPGMRPGVSPNFIMPYQLQRQGQPGQRMGIRRGGNLQHVPQNQMLHRSSNQGFRYMGNNRNGMDPSVVPQGLVGPMMPLPFDGSGVTSAPIDSQRPGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAASGSEVGDQLGSLSLNE 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0917 651 FunFam Polyadenylate-binding protein 28 123 - -
Bisa01g0917 651 Gene3D - 202 303 IPR012677 -
Bisa01g0917 651 Gene3D - 304 409 IPR012677 -
Bisa01g0917 651 FunFam Polyadenylate-binding protein 555 637 - -
Bisa01g0917 651 CDD RRM3_I_PABPs 213 293 - -
Bisa01g0917 651 Gene3D - 558 636 - -
Bisa01g0917 651 Gene3D - 30 123 IPR012677 -
Bisa01g0917 651 CDD RRM4_I_PABPs 317 395 - -
Bisa01g0917 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 559 636 IPR002004 GO:0003723
Bisa01g0917 651 SMART rrm2_1 215 287 IPR003954 GO:0003676
Bisa01g0917 651 SMART rrm2_1 124 196 IPR003954 GO:0003676
Bisa01g0917 651 SMART rrm2_1 319 391 IPR003954 GO:0003676
Bisa01g0917 651 SMART rrm2_1 36 109 IPR003954 GO:0003676
Bisa01g0917 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Bisa01g0917 651 Gene3D - 124 197 IPR012677 -
Bisa01g0917 651 Coils Coil 287 315 - -
Bisa01g0917 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 200 IPR000504 GO:0003723
Bisa01g0917 651 Pfam Poly-adenylate binding protein, unique domain 567 631 IPR002004 GO:0003723
Bisa01g0917 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Bisa01g0917 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 282 IPR000504 GO:0003723
Bisa01g0917 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Bisa01g0917 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Bisa01g0917 651 FunFam Polyadenylate-binding protein 204 300 - -
Bisa01g0917 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Bisa01g0917 651 PANTHER RNA BINDING PROTEIN 34 97 - -
Bisa01g0917 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Bisa01g0917 651 SMART rrm1_1 124 196 IPR000504 GO:0003723
Bisa01g0917 651 SMART rrm1_1 215 288 IPR000504 GO:0003723
Bisa01g0917 651 SMART rrm1_1 36 109 IPR000504 GO:0003723
Bisa01g0917 651 SMART rrm1_1 319 391 IPR000504 GO:0003723
Bisa01g0917 651 FunFam Polyadenylate-binding protein 301 405 - -
Bisa01g0917 651 CDD RRM2_I_PABPs 121 196 IPR045305 -
Bisa01g0917 651 SMART poly_2 571 634 IPR002004 GO:0003723
Bisa01g0917 651 SUPERFAMILY RNA-binding domain, RBD 36 202 IPR035979 GO:0003676
Bisa01g0917 651 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 36 631 IPR006515 GO:0003723
Bisa01g0917 651 SUPERFAMILY PABC (PABP) domain 502 636 IPR036053 GO:0003723
Bisa01g0917 651 SUPERFAMILY RNA-binding domain, RBD 213 398 IPR035979 GO:0003676
Bisa01g0917 651 FunFam Polyadenylate-binding protein 124 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0917 Bisa-ChrBisa01 15148950 15152469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0917 34 645 Eukaryotic Initiation Factors Gene Family AT1G71770 60.191 0.0 729