Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0870 ATGTCCTTCCGAAGTATAGTTCGTGATGTAAGGGATGGTTTTGGAAGCTTATCAAGGCGGAGTTTCGATGTAAGGCTTCTCGGCCATCACAGGGGAAAGTCACATAGTTCAGTCCACGAGTTGCAGGAACAGCCTCCGGTGATACAGAACAGCCGCTGGGCGAGCCTTCCACCTGAGCTTCTTCATGATGTTATCAAAAGATTGGAAGAAAGCGAGAGCATGTGGCCTGCTCGTAAGCATGTGGTCGCGTGTGCTGCCGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTAAGCAATCCAGAATTCTGTGGGAAAATTACTTTCCCTGTTTCCTTGAAGCAGCCTGGGCCCCGGGATGGAATGATCCAATGTTTCATCAAGAGAGACAAGTCTAATCTGACATACCACCTCTTCCTTTGCCTCAGTCCCGTCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCCAAACGCACCAGAAGAACAACTTGCACGGAGTATACTATATCAATTGATGCGGATAACATATCAAGATCTAGTAGCACTTGTATTGGAAAACTGAGGTCTAATTTTCTTGGCACCAAATTCTTAATATATGATACGCAGCCTCCCTATAATTATGCTCAGCTGTCTCAGCCAGGCCGAAGCCGTAGGTTTTATTCTAAAAAGGTTTCTCCAAAAGTCCCAAGTGGCAGTTACAACATTGCCCAGGTCACCTATGAGCTGAATGTTCTCGGTACAAGGGGCCCACGCCGTATGAACTGCGCTATGTTCTCAATCCCCCAGTCAGCCCTTGAACCTGGTCGCACTGTCCCGGGTCAGCCAGAGCTCCTTCCCCGCTCCCTTGAGGATTCATTCCGGAGTATATCCTTCTCAAAATCAATGGACAAATCAGCTGATTTTAGCAGCTCTAGATTCTCAGACATTACGTGGTCCGGCAACGAAGAAGAGGGAGAAGGAAAGGAGAGGCCACTAGTTCTTAAGAACAAGTCTCCAAGATGGCACGAGCAGCTGCAATGCTGGTGTCTCAACTTCCGGGGCAGGGTAACAGTGGCTTCTGTCAAGAATTTTCAGCTGATTGCTGCAACACAGCCGGCTGCCGGTGCCCCTACACCTGCACAGCCTACACAGCCGGATCACGATAAGATTATTCTTCAGTTCGGCAAGGTTGGGAAGGATATGTTCACAATGGACTACCGTTATCCCCTCTCGGCATTTCAGGCTTTTGCGATATGCTTGACTAGCTTTGACACTAAACTAGCATGTGAATAG 1278 0.4789 MSFRSIVRDVRDGFGSLSRRSFDVRLLGHHRGKSHSSVHELQEQPPVIQNSRWASLPPELLHDVIKRLEESESMWPARKHVVACAAVCKSWREMCKEIVSNPEFCGKITFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPVLLVENGKFLLSAKRTRRTTCTEYTISIDADNISRSSSTCIGKLRSNFLGTKFLIYDTQPPYNYAQLSQPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCAMFSIPQSALEPGRTVPGQPELLPRSLEDSFRSISFSKSMDKSADFSSSRFSDITWSGNEEEGEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPAQPTQPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0870 425 Gene3D Tubby Protein; Chain A 112 419 IPR025659 -
Bisa01g0870 425 Pfam Tub family 114 420 IPR000007 -
Bisa01g0870 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Bisa01g0870 425 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Bisa01g0870 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Bisa01g0870 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Bisa01g0870 425 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bisa01g0870 425 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bisa01g0870 425 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Bisa01g0870 425 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bisa01g0870 425 Gene3D - 48 102 - -
Bisa01g0870 425 PANTHER TUBBY-RELATED 33 423 - -
Bisa01g0870 425 FunFam Tubby-like F-box protein 110 425 - -
Bisa01g0870 425 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Bisa01g0870 425 CDD F-box_AtTLP-like 53 97 - -
Bisa01g0870 425 FunFam Tubby-like F-box protein 48 101 - -
Bisa01g0870 425 Pfam F-box domain 53 101 IPR001810 GO:0005515
Bisa01g0870 425 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Bisa01g0870 425 SUPERFAMILY Tubby C-terminal domain-like 102 425 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0870 Bisa-ChrBisa01 14392399 14396139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0870 1 425 TUB Transcription Factor Family AT1G76900 70.370 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bisa01g0870 Tub 8.3e-116 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g0870 01 14392399 14396139 Bisa01g0870 01 14392399 14396139 ECH