Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0834 ATGGAGTTTCTAGCGATCGGAGAGGGGGGTGGTGTTTCGGTCAATCTCTCACATGGAATGGCAGATCTTGTTAGCTACGGGAATGCCGACCGTGACTTAGAGCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCATTTAGGCTTTCCAAGGATGAATCATCTTTAATCTGGATTTCAAGTGGTGGAGAAAGAAGATTGAAGCTATCTTCTGTCTCAAGAATTGTTCCTGGACAAAGAACAGCTGTTTTCCAACGGTATTTGCGTCCTGAGAAGGACTATTTGTCTTTTTCCCTTATTTATAACAACGGAAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCACTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGTTGGAGTGATGGGGGCCTCTATCTTGATGATAACAGAGACTTGACATCAAATAGTCCAAGTGAAAGTTCAGTTAGTACTTCACGGGATATTAACTCTCCGGATACTTCTGTGAGTTTTAATCCTAACACTTCTCCAAAGTCCTTTCGACCGGGGAATTCCGTGAGTTCTGAAAGATCACATGCTCCATCAGACCCAATAAACATGCAAGTGAAAGGTTCTGGTTCAGATGCTTTTCGAGTTAGTGTTTCAAGTGCCCCCAGCACATCTAGTCATGGATCTGCACCAGACGATTGTGATGCTCTGGGGGATGTATACATATGGGGGGAGGTTTTCTCTGAGAATCTTGTAAGAGTTGGTGCAGATAAAAGTGTTCATTTCAGTCCATGGGCAGATGTTCTTCTCCCCAGGCCACTAGAGTCCAATGTAGTTTTAGACGTACATCATATAGCTTGTGGTGTTAAACATGCTGCACTAGTCACAAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCTGGAGGACGCCTGGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTTTAGTTGAAGCCTTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTTCATACCTGTGCTGTTACAATGGCAGGGGAACTATATACTTGGGGTGATGGAACCCACAATGCTGGACTTCTTGGTCATGGCACTGATGTTAGCCACTGGATACCAAAGAGAATTTCAGGTCCACTGGAGGGACTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCACACAGCCTTGGTAACTGCAACTGGGCAACTCTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAGATAGGGAGAATGTTTCATATCCTAGAGAAGTGGAATCCTTGTCAGGGTTAAGAACAATAGCTGCTGCATGTGGAGTGTGGCATACTGCAGCTGTGGTAGAGGTTATTGTGAAACAATCCAGTGCAAGCATATCGTCAGGTAAATTGTTTACGTGGGGTGATGGAGATAAAAATCGCCTTGGACAAGGAGACAAGGAGGCTCGGCTTGAACCAACTTGTGTGCCTTCGCTTATTGATTATAATTTTTGTAAAATTGCTTGCGGGCACAGTTTGACAGTTGGCCTAACAACGTCAGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCACAGTCTAATGGAAAGTTGCCTTGTTTGGTTGAAGACAAGTTGTCTGAAGAATCTGTTGAAGAAATTGCTTGTGGTGCATATCATGTTGCTGTTTTAACATCCAAAAATGAAGTTTACACATGGGGGAAGGGTGCTAATGGTAGGTTGGGTCATGGAGATGTCGAAGATCGAAAAGCACCAACACTGGTTGAAGCTTTGAAAGATAGACACGTTAAATATATTGCATGTGGTTCAAACTACTGTGCTGCCATATGCCTTCATAAATGGGTATCAGGCGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGTTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGACTTGTGCATTGCCACTCATGCAGTTCAAGGAAAGCATTAAGAGCAGCATTGGCTCCTAATCCTGGCAAGCCATATCGTGTTTGTGATTCTTGTTTTGCTAAATTGAACAAGGTGGCAGAGGCTGGCTTTAATAATAGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTAGACAAGTCTGAGATAAGGTTGGCCAAGTCACCAGTTCCTTCTAATATGGATTTGATAAAGCAGCTGGATAGTAAGGCAGCCAAACAAGGGAAGAAGGGTGATACATTTGCCCTGGTTCGCACCTCACAAGCCCCTTCTTTGCTGCAGCTCAAAGATGTTGTCTTGTCTACTGCTGTTGATCTAAGACGAACAGTTCCAAGACCAGTTCTTACATCATCTGGAGTAAGTTCCAGGTCTGTGTCCCCTTTCTCAAGAAGACCAAGCCCACCTCGTTCAGCTACGCCTGTTCCAACAACTTCAGGACTTTCCTTCTCAAAAAGTATAGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCTGAAGTTACGTGCTCAGGTCGAGAGCCTGAGACAGAGATGTGAATTGCAAGAATTAGAGCTTCAAAGGGCAGAAAAGAAAACTCAGGAAGCTACGGCACTGGCTGCTGAGGAATCTGCTAAATCTAAATCTGCAAAAGAAGTTATAAAGTCCCTTACAGCACAGCTCAGAGATCTAGCTGAGAGGCTACCTCCTGGATCTTATGAAGTTGAGAATGTCAGACCAGCTTACCTGCCAAATGGTTTGGAGCCAAATGGCATGCACTATCCTGACTCTAATGGCCAGCACCACACCAGAGCAGAGTCAATCAGCGGCTCTAGCTTGGCCTCCATACCTGTTGAATCTTCTCCGTTCAATAGAACAGAGGGCACAGGATCCTACGGAACCAATCTTTACCAGCAAAACCAAGGGCTCGGACCTTCCAATGGGACAAATGAATACCCCAATGTTAAACTTCCCAACGGTGGAAGTGTGATTCAGACAACCACCAGTAGCATGTCAGATGCTGTTGAGGGCAGGAATTCTGGGCCTCTCCAAGATGGCGAGGGGGGTTTGAGATCAAGGAATGCTCTACTGGCTGCTAATACTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGGGTGTATATAACACTTATGGCCTTGCGTGATGGAACGCGAGATCTAAGACGAGTGCGCTTCAGCCGAAGAAGATTTGGAGAGCACCAAGCAGAAACTTGGTGGTCTGAGAATCGGGAGAAGGTATATGAAAGGTACAATGTTCGTAGTAGCACTGACAAGTCTGCCGGCCAAGCAGCTCATAAGACAGAGGGTGCAGTCTCACCTGTTTCGTAA 3414 0.449 MEFLAIGEGGGVSVNLSHGMADLVSYGNADRDLEQALIALKKGAQLLKYGRKGKPKFCPFRLSKDESSLIWISSGGERRLKLSSVSRIVPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDNRDLTSNSPSESSVSTSRDINSPDTSVSFNPNTSPKSFRPGNSVSSERSHAPSDPINMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVFSENLVRVGADKSVHFSPWADVLLPRPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVALVTCGPWHTALVTATGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAAACGVWHTAAVVEVIVKQSSASISSGKLFTWGDGDKNRLGQGDKEARLEPTCVPSLIDYNFCKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSNGKLPCLVEDKLSEESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKAPTLVEALKDRHVKYIACGSNYCAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFAKLNKVAEAGFNNRRNAMPRLSGENKDRLDKSEIRLAKSPVPSNMDLIKQLDSKAAKQGKKGDTFALVRTSQAPSLLQLKDVVLSTAVDLRRTVPRPVLTSSGVSSRSVSPFSRRPSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNQEVLKLRAQVESLRQRCELQELELQRAEKKTQEATALAAEESAKSKSAKEVIKSLTAQLRDLAERLPPGSYEVENVRPAYLPNGLEPNGMHYPDSNGQHHTRAESISGSSLASIPVESSPFNRTEGTGSYGTNLYQQNQGLGPSNGTNEYPNVKLPNGGSVIQTTTSSMSDAVEGRNSGPLQDGEGGLRSRNALLAANTNQIEAEWIEQYEPGVYITLMALRDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYERYNVRSSTDKSAGQAAHKTEGAVSPVS 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0834 1137 PRINTS Chromosome condensation regulator RCC1 signature 528 546 IPR000408 -
Bisa01g0834 1137 PRINTS Chromosome condensation regulator RCC1 signature 426 440 IPR000408 -
Bisa01g0834 1137 PRINTS Chromosome condensation regulator RCC1 signature 586 607 IPR000408 -
Bisa01g0834 1137 PRINTS Chromosome condensation regulator RCC1 signature 369 385 IPR000408 -
Bisa01g0834 1137 PRINTS Chromosome condensation regulator RCC1 signature 319 335 IPR000408 -
Bisa01g0834 1137 PRINTS Chromosome condensation regulator RCC1 signature 410 426 IPR000408 -
Bisa01g0834 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 256 316 IPR000408 -
Bisa01g0834 1137 MobiDBLite consensus disorder prediction 164 226 - -
Bisa01g0834 1137 Pfam Pleckstrin homology domain 34 142 IPR001849 -
Bisa01g0834 1137 SUPERFAMILY PH domain-like 33 142 - -
Bisa01g0834 1137 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 76 916 - -
Bisa01g0834 1137 Pfam Transcription factor BRX N-terminal domain 894 926 IPR027988 -
Bisa01g0834 1137 MobiDBLite consensus disorder prediction 1114 1137 - -
Bisa01g0834 1137 Coils Coil 843 919 - -
Bisa01g0834 1137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 716 IPR013083 -
Bisa01g0834 1137 FunFam PH, RCC1 and FYVE domains-containing protein 1 477 648 - -
Bisa01g0834 1137 FunFam Putative E3 ubiquitin-protein ligase HERC1 31 151 - -
Bisa01g0834 1137 MobiDBLite consensus disorder prediction 1021 1040 - -
Bisa01g0834 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 424 475 IPR000408 -
Bisa01g0834 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 487 538 IPR000408 -
Bisa01g0834 1137 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 303 313 IPR000408 -
Bisa01g0834 1137 SMART fyve_4 641 710 IPR000306 GO:0046872
Bisa01g0834 1137 Gene3D - 32 148 IPR011993 -
Bisa01g0834 1137 Pfam FYVE zinc finger 643 709 IPR000306 GO:0046872
Bisa01g0834 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 423 IPR000408 -
Bisa01g0834 1137 ProSiteProfiles BRX domain profile. 1058 1113 IPR013591 -
Bisa01g0834 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 317 365 IPR000408 -
Bisa01g0834 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 486 533 IPR000408 -
Bisa01g0834 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 592 639 IPR000408 -
Bisa01g0834 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 538 587 IPR000408 -
Bisa01g0834 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 369 419 IPR000408 -
Bisa01g0834 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 424 472 IPR000408 -
Bisa01g0834 1137 SUPERFAMILY RCC1/BLIP-II 255 644 IPR009091 -
Bisa01g0834 1137 Gene3D - 479 648 IPR009091 -
Bisa01g0834 1137 CDD FYVE_like_SF 652 705 - -
Bisa01g0834 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 591 642 IPR000408 -
Bisa01g0834 1137 CDD PH_PLC_plant-like 31 143 - -
Bisa01g0834 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 539 590 IPR000408 -
Bisa01g0834 1137 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 647 709 IPR017455 -
Bisa01g0834 1137 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 410 420 IPR000408 -
Bisa01g0834 1137 FunFam PH, RCC1 and FYVE domains-containing protein 1 227 476 - -
Bisa01g0834 1137 MobiDBLite consensus disorder prediction 165 226 - -
Bisa01g0834 1137 Pfam Transcription factor regulating root and shoot growth via Pin3 1057 1112 IPR013591 -
Bisa01g0834 1137 Gene3D - 227 478 IPR009091 -
Bisa01g0834 1137 MobiDBLite consensus disorder prediction 803 821 - -
Bisa01g0834 1137 FunFam Putative E3 ubiquitin-protein ligase HERC1 649 717 - -
Bisa01g0834 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 317 368 IPR000408 -
Bisa01g0834 1137 MobiDBLite consensus disorder prediction 803 836 - -
Bisa01g0834 1137 SUPERFAMILY FYVE/PHD zinc finger 643 714 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0834 Bisa-ChrBisa01 13512673 13520301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0834 1059 1115 Major Intrinsic Protein MIP AT1G31880 52.632 2.80e-13 70.9