Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0678 ATGAGGGAGACAACTCTTGTCGGCGAAAAGGAGTTAATGTCTATTTCTGATCTTGTAGCTCTGATAGTGACTATAGCCTCGGATATAAGATCTGATTACACACTGGGTCGATTTGTTCCAGAAGGAGAAATGAGGCCTATCTTCTGTGGAAACTTTGAATATGATGCTCGGCAGTCTGATCTGGAGCGTCTTTTTAGAAGATATGGGAAGGTTGACCGGGTGGATATGAAGTCTGGGTTTGCCTTTATCTATATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCACTTGATCGGATAGAATTTGGTCGAAAGGGACGCCGACTTCGTGTGGAATGGACAAAACATGAACGTGGCATTAGAAGGCCTGGTGGTTTGAGAAGATCTGCAGCTAATTTGAGGCCATCAAAGACTTTATTTGTCATTAATTTTGATACATATCATACCAGGACGAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCATTTGTTCAGTATGAATCAGAGGATGATGCCAGCAGAGCTTTGGAAGCTACAAATATGAGTAAGTTACTGGATCGAGTTATTTCAGTAGAATTTGCTGTAAAGGATGATGATGATAGGCGAAATGGGTATAGCCCTGATAGAAGCCGCAATAGAAGGCGGTCACCTAGTCCTTATCACCGAGAAAGGGGTAGCCCTGATTATGGCCATGGATCTAGCCCATATAGGAGAGACAAGAGCAGCCCTGACTATGGTCGTAGCCGCAGCCGAAGCCCCCGCCGGAATGAGAGAGCTAGCCCTGATTATAATCGTAGAAGCCGTAGTCCATACAGAAGAGAAAGGGATGAACCTGTTCGTGGCTCTAGCCATAGTCCTTATCACAGAGAGAGAGCAAGAGCTGACCGTGGCAACTCTCCCTCCCATAGTCCTAATGGAAGAGAGAGAGTGAGCCCTCAAAATGGTCTTGGTTCTAGCCGTAGTCCATACTATACAGAGAGAACTAGCCCTGAAAATGGCCATGGGTCAAAAAGTAGTCCTGATGCGAGAGGGGATCCAAGTCCTTACAATGGCGATGGAGGTAGCCCAAATTCTATGCGTGAGCCCAAGGGCAGTCCCAACTATGGTGCTCCTGACAGTCCCATGAATGAAAGATACCGCAGCCATTCACCTGCCGCTGAAGAATGA 1206 0.4652 MRETTLVGEKELMSISDLVALIVTIASDIRSDYTLGRFVPEGEMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRIEFGRKGRRLRVEWTKHERGIRRPGGLRRSAANLRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPDRSRNRRRSPSPYHRERGSPDYGHGSSPYRRDKSSPDYGRSRSRSPRRNERASPDYNRRSRSPYRRERDEPVRGSSHSPYHRERARADRGNSPSHSPNGRERVSPQNGLGSSRSPYYTERTSPENGHGSKSSPDARGDPSPYNGDGGSPNSMREPKGSPNYGAPDSPMNERYRSHSPAAEE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0678 401 FunFam Serine/arginine-rich splicing factor RS31 44 128 - -
Bisa01g0678 401 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 139 331 - -
Bisa01g0678 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 202 IPR000504 GO:0003723
Bisa01g0678 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 105 IPR000504 GO:0003723
Bisa01g0678 401 SUPERFAMILY RNA-binding domain, RBD 133 238 IPR035979 GO:0003676
Bisa01g0678 401 Gene3D - 39 131 IPR012677 -
Bisa01g0678 401 Gene3D - 132 219 IPR012677 -
Bisa01g0678 401 MobiDBLite consensus disorder prediction 311 349 - -
Bisa01g0678 401 CDD RRM1_AtRSp31_like 45 116 - -
Bisa01g0678 401 MobiDBLite consensus disorder prediction 211 310 - -
Bisa01g0678 401 FunFam Serine/arginine-rich splicing factor RS31 130 220 - -
Bisa01g0678 401 MobiDBLite consensus disorder prediction 211 401 - -
Bisa01g0678 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 117 IPR000504 GO:0003723
Bisa01g0678 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 209 IPR000504 GO:0003723
Bisa01g0678 401 SUPERFAMILY RNA-binding domain, RBD 44 130 IPR035979 GO:0003676
Bisa01g0678 401 SMART rrm1_1 139 205 IPR000504 GO:0003723
Bisa01g0678 401 SMART rrm1_1 46 113 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0678 Bisa-ChrBisa01 10487948 10495237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0678 47 204 Eukaryotic Initiation Factors Gene Family AT4G34110 24.277 5.04e-09 56.2