Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0657 ATGATCGAACCCAAACGATCCTGCTTCAGTCTACTCACCTGGTTTTATCTCCTCTTCCTTCTCCTCCCGGCGGTGTACCTCCTCGCTGATGCACATTCGCCAACAGAACCGACGCAGCCGCCGTCGGCTCCCTTGCGCAATGATGTTGACCTTCCCGCTTCCGTCAAGGCCGTAATCCTTCTCTGCGCTTTCATCTTGATCAGCATCTTTTCGATCTACCTCAACCATTGGGCCGTGTTATACATCGCCCACCGGCACGAAATCGGCGGAGGTGGCAGAGATTGGCGGTGCTCTTGCTCTACGGGAATCGGCCGGGAAGTCATCGACACATTCCCGATCCTCTTGTATTCGACAATCAAAGACCTAAAGATCGGAAAAGGAGCGCTGGAATGCGCAGTATGCTTAAGCGAGTTCGAAGACTACGAGACCCTCCGATTGGTACCAAAATGCAACCACGTATTTCACCCCGAGTGTATCGACGCCTGGTTAGCTTCTCACGTGACTTGTCCCGTTTGCCGCTCAAACCTGAACCCAGACTCCGGCGAAGCATCCATCGGAGTGCCGACTCAGTTAAACGCTAACGAATTGGACGAAGAAAGCGAAGCAGAGAATTCTGGAGGCAGCAGAGCGGAAGCGAGTGAATCAGAGCAGCAGCAGCATGCAGTACTGCGTATGCTTAACGAAGGCGAAAGCACCAGCAGTAACTGTTGCCAATCAGATACTGATAGAGCCAATATGTGCGAAGGCAGAGCGACGCAAAATGGAAATCGAAGATCGAGACGGAGAACGTTCGGGAAGCTTCCTAGATCGAACTCGACGGGACATTCGCTGGTCGAACCTGGGAAGAACACCGAGAGGCATACGCTGAGGTTGCCGGAGGACATTCGGAGGTATATTCTTCTGAATCATGCCATGATCCGACGTTCTGCGAGCCACAATGTGGCGATGCCGATGAAAGGGATGGGTTGGAGTGACAGCGAAGGAAGCAGCAGAGGTAAGACGAACTACATTGAGCGTCAAGATCAGTAG 1029 0.5287 MIEPKRSCFSLLTWFYLLFLLLPAVYLLADAHSPTEPTQPPSAPLRNDVDLPASVKAVILLCAFILISIFSIYLNHWAVLYIAHRHEIGGGGRDWRCSCSTGIGREVIDTFPILLYSTIKDLKIGKGALECAVCLSEFEDYETLRLVPKCNHVFHPECIDAWLASHVTCPVCRSNLNPDSGEASIGVPTQLNANELDEESEAENSGGSRAEASESEQQQHAVLRMLNEGESTSSNCCQSDTDRANMCEGRATQNGNRRSRRRTFGKLPRSNSTGHSLVEPGKNTERHTLRLPEDIRRYILLNHAMIRRSASHNVAMPMKGMGWSDSEGSSRGKTNYIERQDQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0657 342 CDD RING-H2_EL5-like 130 173 - -
Bisa01g0657 342 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Bisa01g0657 342 MobiDBLite consensus disorder prediction 320 342 - -
Bisa01g0657 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 33 281 - -
Bisa01g0657 342 FunFam E3 ubiquitin-protein ligase ATL6 93 179 - -
Bisa01g0657 342 Pfam Ring finger domain 130 173 IPR001841 -
Bisa01g0657 342 SMART ring_2 131 172 IPR001841 -
Bisa01g0657 342 SUPERFAMILY RING/U-box 130 183 - -
Bisa01g0657 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 181 IPR013083 -
Bisa01g0657 342 MobiDBLite consensus disorder prediction 247 282 - -
Bisa01g0657 342 MobiDBLite consensus disorder prediction 196 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0657 Bisa-ChrBisa01 10127624 10130620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0657 17 307 Rapid Response to Elicitors AT3G05200 38.356 2.40e-51 173