Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0652 ATGGTGGGTCCTGAGCTCATATATGAGTTTCTATCTAATTACTGCAACTGCTTTGTCAATTTAAATACTCCGAGGTGTCACCGAAAGCAACCCAATCGAATAGAAGAGGAAGAAGATGCAATCGAGAGCTATGGTCGGACAGAGGAGCAGACAACAACGGCGGAGAGGACAGCGGCGGAGATGAAGCCGGAGGAGACAAAGCCGGAAAACAACATAGAACTTTCTTGTAAGAGACAAGAAAACGGCGTCGCTTGCCGCTGCTCGTCTTCGACCTGCGAGGGAGCGTCTGGTTTCGAATCCAAAGTGTTCACCCTCTTGGTCCTTCAGCTTTCGCCTCTTGTAGAAAGTCTCACAACGTCTGCCTTTCTCTCTCTCACAAACTCGCCCGCAATCATGGGTGTGAAGCATTTGTGGGATATCCTCGAATGCTGCAAGAAAACAGTTCCACTTCACCATCTCCAGAACAAGAGGGTATGCATAGATCTCTCGTGTTGGATGGTGCAACTTCAGAATGTGAGCAAATCACACTCGTGTGTGAAGGAGAAGGTCTACCTCAGAGGTCTCTTTCATCGCCTTAGAGCACTCATTTCTTTGAATTGCAGCCTAATTTTTGTTACAGATGGATCAATTCCTGCTATTAAATTATCAACTTATAGGCAACGCCTAAACTCTGGAAAAGAGGTAGCACAAAATGAAGGTGACTTACAGAAAGTATCTTCATTACGAAGAAACATGGGATCTGAGTTTTCGTGCATGATAAAAGAGGCAAACGTGTTGGGGATGGCTCTAGGCATCCCTTGTCTGAATGGAATTGAAGAAGCTGAAGCTCAGTGTGCATTATTGAACTCCGAATTATTATGTGATGGATGTTTCAGTTCAGATTCAGATATCTTTCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGATGGCGGATATGTTGTTTGTTACGAGATGGTAGACATTGAAAGAAAGCTTGGATTTGGAAGGGACTCATTGATTGCTCTTGCCTTACTTCTTGGTAGTGACTACAGTCAAGGAGTTTATGGTATTGGTCCAGAGTCAGCTTGTCAGATAGTTAAATCAACTGGGGACAAATTTGTGCTTCAAAAAATTGCTTCTGAAGGACTTGAATGTCTGAAAAGACTAAAAGGTGCAAAGAAACTGGGGCAAGTTCTCAAGAGCAGCAACAAAGAAAATATATTGAACCATGACATGGCATTGAGTCATGGAGGTGAGAGTAATTCACAAAGAGATTATCACTTTTTGCAAGTTATCAATGCTTATATGAAGCCAAAGTGCCACCCAGCAGATTCTGATATTGTGATGAGGGTTCTTGCTCAATATCCATTTCAACGCAGTAAACTCCATCAGATATGTGCTATATTCTTTCAGTGGCCTCCAGAGAAAACAGATGAATATATCCTACCAAAGATTGCTGAAAGAGATTTACGGCGATTTGCCAATTTACGTCTAACTTCATCAGAAGCAGGAATGAATCTTCCTTTACATGAGATCCCTGTTAAGTGTCCTGTATCAGAAATCATGAAGGGCCGCAAAGTTCAAGGAAGAGAATGCTATGAGGTGTCATGGCATGAAATAGATGGACTTAGAACTTCAATAGTATCAGCAGATCTTTTGGAAAGTGCCTGTCCTGAGAAGATTTTAGAGTTCAAAGAGAGAAAAGTCGAATTGAAGAAACAAAATATTCAGAAAAGAAGGCCAAAGAAAACTGAAGCTACTTCTTCTATGGCTGAACTTGATCTGAAGCTGAAGAATCTGTTGCTGGATGTAAATCCTGGTGACCGTGCCAATCACAATGCCTCTAATTTGTCAGAACATGTATTTCAAGATACAACTGCTATGGCTGAAGCTAATCTGAATAACCGAGACTTGTTTCATATGTCACATGATGAAGAACATGTTGGGTTGAATCAGAATATTAGCCACATATCTAACCATCAGGCTGATTCCAGCAGAGCTGAGACTGATGTCATTGATCTGCTGAGCCCTTCACCTAAACAATCCTATGCTCCCTCAAAATGTCGACAATCTAATGGTCAACATATTGAGGTGATTAATTTGAGTGACTCGGAAAATGACACGTCACCTGAACATACGAGGAAAGCAAAGGAGTTGAGATTGTTCTTAGCAAAGCATTAG 2172 0.418 MVGPELIYEFLSNYCNCFVNLNTPRCHRKQPNRIEEEEDAIESYGRTEEQTTTAERTAAEMKPEETKPENNIELSCKRQENGVACRCSSSTCEGASGFESKVFTLLVLQLSPLVESLTTSAFLSLTNSPAIMGVKHLWDILECCKKTVPLHHLQNKRVCIDLSCWMVQLQNVSKSHSCVKEKVYLRGLFHRLRALISLNCSLIFVTDGSIPAIKLSTYRQRLNSGKEVAQNEGDLQKVSSLRRNMGSEFSCMIKEANVLGMALGIPCLNGIEEAEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMVDIERKLGFGRDSLIALALLLGSDYSQGVYGIGPESACQIVKSTGDKFVLQKIASEGLECLKRLKGAKKLGQVLKSSNKENILNHDMALSHGGESNSQRDYHFLQVINAYMKPKCHPADSDIVMRVLAQYPFQRSKLHQICAIFFQWPPEKTDEYILPKIAERDLRRFANLRLTSSEAGMNLPLHEIPVKCPVSEIMKGRKVQGRECYEVSWHEIDGLRTSIVSADLLESACPEKILEFKERKVELKKQNIQKRRPKKTEATSSMAELDLKLKNLLLDVNPGDRANHNASNLSEHVFQDTTAMAEANLNNRDLFHMSHDEEHVGLNQNISHISNHQADSSRAETDVIDLLSPSPKQSYAPSKCRQSNGQHIEVINLSDSENDTSPEHTRKAKELRLFLAKH 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0652 723 Pfam XPG I-region 264 346 IPR006086 GO:0004518
Bisa01g0652 723 Pfam XPG N-terminal domain 132 223 IPR006085 GO:0004518
Bisa01g0652 723 SMART HhH_4 333 366 IPR008918 GO:0003677|GO:0003824
Bisa01g0652 723 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 331 493 IPR036279 -
Bisa01g0652 723 FunFam flap endonuclease GEN-like 2 133 330 - -
Bisa01g0652 723 MobiDBLite consensus disorder prediction 34 70 - -
Bisa01g0652 723 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 202 221 IPR006084 -
Bisa01g0652 723 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 260 277 IPR006084 -
Bisa01g0652 723 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 281 301 IPR006084 -
Bisa01g0652 723 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 155 169 IPR006084 -
Bisa01g0652 723 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 336 351 IPR006084 -
Bisa01g0652 723 CDD H3TH_XPG-like 334 377 - -
Bisa01g0652 723 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 132 696 IPR006084 -
Bisa01g0652 723 FunFam Flap endonuclease GEN-like 1 331 389 - -
Bisa01g0652 723 Gene3D - 133 330 - -
Bisa01g0652 723 SMART xpgn3 132 228 IPR006085 GO:0004518
Bisa01g0652 723 CDD PIN_GEN1 133 329 - -
Bisa01g0652 723 Gene3D - 332 392 - -
Bisa01g0652 723 SUPERFAMILY PIN domain-like 133 346 IPR029060 -
Bisa01g0652 723 SMART xpgineu 261 331 IPR006086 GO:0004518
Bisa01g0652 723 MobiDBLite consensus disorder prediction 53 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0652 Bisa-ChrBisa01 10046027 10065136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0652 132 367 Core DNA Replication Machinery Family AT5G26680 24.419 3.18e-12 67.4