Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0640 ATGCCTTCTCTATCTCTCTCTGAGAGCCCCAAAGAGAAGAAGGAGAAGAAAGAGAAGAAGAAGATGAAGAACCAGACTCTAACTGAAGAAGCTTCAGAGCCCGAAGCGACAATTGGGAAGAAGAGCAAAAAAGGTTCCAAGCTTGGAAGCGGCGTTAAGGCGTCTGATTCTGACCTGAATGGGTTTTCGGACAGGAAGGCGAAGAAGAAGGAGAGCAAGAAGCGTAAATCTTCGGATATTGATGGGGATGGAGAGAGAAGCGACACTAGCTCGGAGTTGGTTGAGCCTGAAAGTTCGAGAGCGAAGACTGAGGAGAAGAGGAGGAATAATAAAAAGCCGAAATTCGAGGAACCTGGCATGGGAGAGGAAGAGGTCGAGAAGAAGGAGGATGCCAATGCAATATCGAACTTTCGGATATCGGAGCCGTTGAGGGCGAAGTTGAAGGAGAAGGGGATAGAATCACTATTTCCCATTCAGGCCATGACTTTCGATACCGTTTTGGATGGTTCTGATCTCGTCGGCCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCTTTTGTGTTGCCCATATTAGAGTCTTTAACAAATGGTCCAGCAAAAGCATCTAGAAAGACGGGCTATGGGAGATCTCCAAGCGTTCTTGTGCTCTTACCTACTAGGGAATTGGCCTCTCAGGTGTTTGCTGATTTTGAAGTTTATGGTGGGGCTTTGGGTTTGATTTCTTGCTGTTTATATGGTGGATCTCCATATCAAGCTCAAGAAATTAGGCTCAAGAGAGGTGTTGATATTGTTGTTGGAACACCAGGCCGCATAAAGGATCATATAGAGAGGGAAAATATTGATCTGACCCAACTAAGGTTCCGTGTCCTGGATGAGGCAGATGAGATGCTAAGGATGGGTTTTGTTGAAGATGTTGAACTCATTTTGGGTAAGGTTAAAGATCTTAGTAAAGTTCAGACACTTCTATTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTTCGGCAAAATTTTTGAAAGCGGATAAGAAGACTGCTGACCTTGTTGGGAATGAGAAAATGAAGGCTAGCACAAATGTTAGGCATATCGTTCTTCCATGTACTAGTTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCGCTGCTATAGTAGTGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTGAGCTTGCAGGGTTGTTGCCTGGAGCTCGAGCTCTGCATGGTGATATACAACAAGGTCAACGCGAGGTTACATTGTCTGGTTTTAGGTCTGGAAAATTCATGACATTAGTGGCCACAAATGTAGCAGCTCGGGGGTTGGATATTAATGATGTTCAGTTAATTATTCAGTGTGAACCTCCGCGTGATGTAGAAGCATATATTCATCGTTCTGGCCGCACGGGACGAGCTGGTAATACTGGAGTTGCGGTTATGCTTTATGATCCAAGAAGGTCAAATATATCAAAAATAGAAAGAGAATCAGGTGTGAAATTTGATCACATATCTGCTCCCCAGCCTGCTGATATTGCCAAAGCTGTTGGTGGAGCTGCTGCTGAAATGATAAACCAAGTGTCTGATAGTGTCATTCCTGCATTCAAATCTACTGCTGAAGAACTTTTGAAGAACTCCAGTTTATCGGCTGCTGACTTACTTGCAAAAGCTCTTGCAAAGGCTGCTGGTTATACTGAGATAAAGAAAAGATCACTTCTCACTTCCATGGAGAACTATGTCACGTTACTTCTTGAAATCGGGAGACCCATCTTCACCCCTTTTGCATATGGAATCCTGAGGAGATTCTTGCCTGAGGAGAAGGTTGAGTCAGTGAAGGGTCTTACTTTAACTGCAGATGGAAATGGTTGTGTTTTTGATGTACCAGCTGAAGATCTAGATACATTTCTTGCTGGTCAGGAAAATGCTGCTAATGTAAGCTTAGAAGTATTAGAAGTATTGCCGCAGCTGCAAGAAAGAGACCAATCGAGAGGTGGCAGATTTGGTGGTGGTGGTCGTGGTGGCCGCGGTGGGTTTTCTAATAGAAATGGTGGAGGTGGGAACATATTTTCTAGTGGAAGAGGAGGTGGCCGGAATGGTGGATTTTCGAATCAAAGGGTTAATAGGTTTTCTGGTGGTTCCAACGGTGGGAGAGGCCGCGGTGGCAGCAGGGGGGGAAAGAGATGGTAA 2196 0.4517 MPSLSLSESPKEKKEKKEKKKMKNQTLTEEASEPEATIGKKSKKGSKLGSGVKASDSDLNGFSDRKAKKKESKKRKSSDIDGDGERSDTSSELVEPESSRAKTEEKRRNNKKPKFEEPGMGEEEVEKKEDANAISNFRISEPLRAKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRSPSVLVLLPTRELASQVFADFEVYGGALGLISCCLYGGSPYQAQEIRLKRGVDIVVGTPGRIKDHIERENIDLTQLRFRVLDEADEMLRMGFVEDVELILGKVKDLSKVQTLLFSATLPDWVKHISAKFLKADKKTADLVGNEKMKASTNVRHIVLPCTSSARSQLIPDIIRCYSSGGRTIIFTETKESASELAGLLPGARALHGDIQQGQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFDHISAPQPADIAKAVGGAAAEMINQVSDSVIPAFKSTAEELLKNSSLSAADLLAKALAKAAGYTEIKKRSLLTSMENYVTLLLEIGRPIFTPFAYGILRRFLPEEKVESVKGLTLTADGNGCVFDVPAEDLDTFLAGQENAANVSLEVLEVLPQLQERDQSRGGRFGGGGRGGRGGFSNRNGGGGNIFSSGRGGGRNGGFSNQRVNRFSGGSNGGRGRGGSRGGKRW 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0640 731 FunFam DEAD-box ATP-dependent RNA helicase 7 583 654 - -
Bisa01g0640 731 SUPERFAMILY RNA-binding domain, RBD 570 652 IPR035979 GO:0003676
Bisa01g0640 731 SMART ultradead3 151 363 IPR014001 -
Bisa01g0640 731 MobiDBLite consensus disorder prediction 699 714 - -
Bisa01g0640 731 Pfam DEAD/DEAH box helicase 156 333 IPR011545 GO:0003676|GO:0005524
Bisa01g0640 731 CDD GUCT_RH7_like 573 657 - -
Bisa01g0640 731 Gene3D - 356 583 IPR027417 -
Bisa01g0640 731 SMART helicmild6 400 477 IPR001650 -
Bisa01g0640 731 MobiDBLite consensus disorder prediction 74 128 - -
Bisa01g0640 731 MobiDBLite consensus disorder prediction 1 128 - -
Bisa01g0640 731 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 289 297 IPR000629 -
Bisa01g0640 731 CDD DEADc 143 340 - -
Bisa01g0640 731 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 374 516 IPR001650 -
Bisa01g0640 731 Pfam Helicase conserved C-terminal domain 379 477 IPR001650 -
Bisa01g0640 731 CDD SF2_C_DEAD 360 486 - -
Bisa01g0640 731 Gene3D - 584 654 - -
Bisa01g0640 731 MobiDBLite consensus disorder prediction 663 731 - -
Bisa01g0640 731 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 345 IPR014001 -
Bisa01g0640 731 MobiDBLite consensus disorder prediction 8 42 - -
Bisa01g0640 731 Pfam GUCT (NUC152) domain 566 660 IPR012562 GO:0003723|GO:0004386|GO:0005524
Bisa01g0640 731 Gene3D - 75 345 IPR027417 -
Bisa01g0640 731 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 120 546 - -
Bisa01g0640 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 489 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0640 Bisa-ChrBisa01 9846756 9852196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0640 169 483 Eukaryotic Initiation Factors Gene Family AT1G72730 31.975 1.36e-39 149