Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0588 ATGGAGTGCATCCTCTGCACCAAAGTCATACCCGTCTTGAAGCCTGAAGCCACAAACTCAGCCTTCATAGCACTCAAGGAGTTAGGTCCATTTTCTTTCTTTCAAGACGCAGCAAACCGTAATCAAAAGCAACTTTCCCTCCGTCCTCTCTCCGCTTTCTCGCTCCGCATTTCCACTTTCCTATCCTCGTATATCACGCTTCCTTCAATCTCCGCCGTCGATTCCTCTGTTCCACTTCTGAGTATCTCCGGCGAGGCCGCACACCACTCGCCTGTTTACGCCTCCATAATGGTTGTGAGAGGAGGTAAGCCATTGAAGCGGATGAAGATGAGAGTCACAGCTGATTTCTACGACTTCTTCACTTTTCCGTCGCCGCCACTTGTCTTGGCAGACGAGTTCTCCGTCGGATCATTTCGGACTAACGTTCGCTCGTTCTTGTCGAAGCTGCTACCGCCGCCGTCGGCATTGTTCCCGCAACTGCTGACGTGGCAGCTCCTTTTCCGAGTCGGAGACCTGACGGACGGGCCAGAGTCGACGCCGGCGGTGCTCCGTCTCGACGTCGTGGAAGAGGATGTGGCCAGATCCAAATCAGTCTACTGTGATCAGTGTCGAGTTGTTGGTTGGAGTGGCCATCCAGTGTGCGGGAAGCGTTACCATTTTATAATCAAGGCTGATGCTAGCTCCATTGGTGGATACCACAAGCCATGCATGTGCTGTGGAGATATTTTGCATTTGTCAGAGTCGAAGTGCAAGTCATGCAACCATGTGACAACTACAAATGATGTTGAGGACTGGGTGTATCAACAGTTAGAAAACACGTCTCATCTTTTACATGGTGTTGTCCATGCCAATGGTTATGGGCATCTTCTTCGAGTTAATGGCAGGGAAGGGGGCTCGAGAATTCTTTCTGGCTGTCATATCATGAACTTCTGGGATCGCCTCTGCAAGGCACTTGGAGTCAGAAAAGTTAGTGTAATGGATGTTTCAAAGAAATATGGTCTGGAATACCGCCTAATCCATGCCATTGCAAAGGGACATCCTTGGTATGGTGACTGGGGCTATCAATTTGGCTCTGGTAGCTATGGTGTCACACATGAAGCATATAAGTCTGCTGTTGAATGCTTGTCCAATCTACCCTTGTCCATGTTCCTCTCTCAGGGACAGAGACCTGATTCTCGATTGCAGGACACGATCTCATATTACTGCTCTTTGTCAGAGTCCAAGCTTGTGAATATAAAGGACATCTTTTCTTTATTGATGGATTTGATTCATGATGCTCGCATGACATTGTCAAGCGCTGATGATGTCACATGCAAGAGGCGCCGCTTTAATTCTGCAGGAGAGCCATGTTTGTGGGCAAGGAGTGATATTGAACGTGTAGAGGGAGCCATGATCAGAGTTCTGCGTGCAGTGTCTGGATCCAATTGGGTGAGCTGGCGTGCTCTTAGGGGTGCGGTCTGCAAGGTAGGTTCTCCTGAGCTGCTTGATTACTGCCTTGGAGAACTGGGAGGAAAAGTGATTTTTGGTGGAATGGTTGTTAGTACCCGATGCAATGCTGCCACTGGAGCTTTTGAGTACAGACTCGAGGCAGGGAACAGCATTTCTTCTGGCACTACGGCAAGCAATAAATCTTTGCGCTCCAAGTACCCATCTGAAGAGAATCTCCTATATGACTTGAGATATTTATATCAGTGTTTGCTTCATCCTCATATGATGCTAAGCTATGACTCTGAGGGGACAAGGACTGTTGCAACGAGCTCTGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTAAAAGATTATAGGCCTGAGATGTTGCCAATGACAAACTTATATAGAATACGCCTCTCTTGTAGTGTAGAACTTATCGACGAATCCAAAGATTCTAACACAAACCCTCCCCCAGAAGTAATTGTCCTGCCTATGAATGCCACTGTGTCTCACCTCAAGACAGAAGCATCAAATGCTTTTCAAGATGTATATCTCATGTTTAAAAGATTTCAAGTTGATGAGCTTCTCGGCTATGGTGCTGTTGATGATTCCACCCAGGTCAAGCTATTGTTAGGATCAACAGAAGTAGTTCGTGTCCAAGGAAGATGCTTCGAGAAGAATGGGTTGAGCATGTTCCAAATGGAACGTGGAATTGACAGATGGACTGTGGATTGCAGCTGCGGGACCAAAGATGATGATGGGGAGAGAATGTTGGCATGTGATGTGTGTGGAGTGTGGAGACACACTCGGTGTTCTAATATTCATGATGCAGATCCTGTCCCTGCGAATTTTGTTTGTCCAAGATGCCAAAATTTTGAGTTGAAACAGAATTCTAGTGGACACTGCATAGATGAGACTGTGACTAACATCAGTACTAACAGTAGGTGCTTTGGAAACAGCTCGCTAGTGCCTTCTGATGTTCGGTGA 2418 0.4711 MECILCTKVIPVLKPEATNSAFIALKELGPFSFFQDAANRNQKQLSLRPLSAFSLRISTFLSSYITLPSISAVDSSVPLLSISGEAAHHSPVYASIMVVRGGKPLKRMKMRVTADFYDFFTFPSPPLVLADEFSVGSFRTNVRSFLSKLLPPPSALFPQLLTWQLLFRVGDLTDGPESTPAVLRLDVVEEDVARSKSVYCDQCRVVGWSGHPVCGKRYHFIIKADASSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTNDVEDWVYQQLENTSHLLHGVVHANGYGHLLRVNGREGGSRILSGCHIMNFWDRLCKALGVRKVSVMDVSKKYGLEYRLIHAIAKGHPWYGDWGYQFGSGSYGVTHEAYKSAVECLSNLPLSMFLSQGQRPDSRLQDTISYYCSLSESKLVNIKDIFSLLMDLIHDARMTLSSADDVTCKRRRFNSAGEPCLWARSDIERVEGAMIRVLRAVSGSNWVSWRALRGAVCKVGSPELLDYCLGELGGKVIFGGMVVSTRCNAATGAFEYRLEAGNSISSGTTASNKSLRSKYPSEENLLYDLRYLYQCLLHPHMMLSYDSEGTRTVATSSAQKLLDCKQFVKDYRPEMLPMTNLYRIRLSCSVELIDESKDSNTNPPPEVIVLPMNATVSHLKTEASNAFQDVYLMFKRFQVDELLGYGAVDDSTQVKLLLGSTEVVRVQGRCFEKNGLSMFQMERGIDRWTVDCSCGTKDDDGERMLACDVCGVWRHTRCSNIHDADPVPANFVCPRCQNFELKQNSSGHCIDETVTNISTNSRCFGNSSLVPSDVR 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0588 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 707 772 IPR013083 -
Bisa01g0588 805 CDD PHD_MMD1_like 721 766 - -
Bisa01g0588 805 ProSitePatterns Uncharacterized protein family UPF0054 signature. 278 288 IPR020549 -
Bisa01g0588 805 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 111 778 - -
Bisa01g0588 805 SMART PHD_3 721 767 IPR001965 -
Bisa01g0588 805 Pfam PHD-finger 722 768 IPR019787 -
Bisa01g0588 805 SUPERFAMILY FYVE/PHD zinc finger 713 768 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0588 Bisa-ChrBisa01 9178774 9185991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0588 179 766 PHD Transcription Factor Family AT5G22260 28.391 1.93e-82 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa01g0588 PHD 3e-08 CL0390