Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0498 ATGTCTTCTGCCGGCGGCTACGGCGGAGGCGGCGGCAACGTTACCTCCAGCTCTCCTCCGCAACTGTATTACTGCTACCAGTGCAACGCCACCGTCTCCGTTACGCCGTCCGCTTCCTCTGATCTCGTCTGTCCTAATTGCAACGGTGGCTTCATTGAGGAAGTCGATAATCCAATCCCTAATCCCAACCCTAGTCCTGCTAATTCCTTCTTTTCATTCACATCCGAGTTTGGCAGCGGCGGCGGCGGTGCTGGCTTTCCTCTAGTGTTTTCTACCACTTCCACCGGTGGCGGCGGAGGTGGTGGTGGTAATACTGGGCCGATATTCGACGATCTCTCTGCCCTTTTGGGTGGTGGACCTAACCGATCGTCTCTCGGAGAAACTGATGTGTTCAACCCTTATGTGTTTCTTCAAAACTATCTTCAAACCCTGAGAGCCGGCGGTGCTAATGTTCAATTTGTGATAGAGAACTCCGGAGAGCCAAGTGGAACCTTTCGTCTACCCACGAATCTCAGTTTCGGTGATTACTTTTTCGGACCTGGTCTTGAGCAATTGATTCAACAGCTTGCGGAGAACGATCCAAACCGATATGGGACGCCCCCGGCTTCGAAATCTGCCATCGAGGGGCTCCCTAATGTCAAGATTACGAAGGATTTGTTGGCTTCGGATTCATCGCAATGTGCTGTGTGTAAAGATACATTTGAGCTCGGGGAAGAGGCGAAGCAGATGCCATGTAAGCATATTTATCATTCAGATTGCATTATACCTTGGTTGGAATTGCACAATTCTTGTCCCGTTTGCCGGTACGAGTTACCGACTGATGATCCTGACTACGAGCAAAGAACTCGTGGAACCCCTACGCAAGTGAATCGTAGTCAATCTACCGGGGAGGGTGGGTCCGCTGATTCTTCTGAAGTTGGTAATAGCGGTGCCGGTGGTGGTGCAGCATCTGGAGATGACACACAGTCACCGAGGGAGCGCAGGTTTAGGGTTTCCTTGCCTTGGCCTTTTAGGCAATTGGCTTCTGTTGCCGAGACTAGCAATACCGGTAATGCCAACATCAGCGGAAACAATAGCGGGGAATCAAATCCTGGAAGAAGTGGAGACCGGAATTTTCAGTCCGAGACCAGACAAGAAGATCTCGATTAA 1149 0.51 MSSAGGYGGGGGNVTSSSPPQLYYCYQCNATVSVTPSASSDLVCPNCNGGFIEEVDNPIPNPNPSPANSFFSFTSEFGSGGGGAGFPLVFSTTSTGGGGGGGGNTGPIFDDLSALLGGGPNRSSLGETDVFNPYVFLQNYLQTLRAGGANVQFVIENSGEPSGTFRLPTNLSFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPNVKITKDLLASDSSQCAVCKDTFELGEEAKQMPCKHIYHSDCIIPWLELHNSCPVCRYELPTDDPDYEQRTRGTPTQVNRSQSTGEGGSADSSEVGNSGAGGGAASGDDTQSPRERRFRVSLPWPFRQLASVAETSNTGNANISGNNSGESNPGRSGDRNFQSETRQEDLD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0498 382 MobiDBLite consensus disorder prediction 341 371 - -
Bisa01g0498 382 MobiDBLite consensus disorder prediction 273 382 - -
Bisa01g0498 382 SMART ring_2 227 267 IPR001841 -
Bisa01g0498 382 MobiDBLite consensus disorder prediction 282 307 - -
Bisa01g0498 382 SUPERFAMILY RING/U-box 207 275 - -
Bisa01g0498 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 127 272 - -
Bisa01g0498 382 Pfam Ring finger domain 226 268 IPR001841 -
Bisa01g0498 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 274 IPR013083 -
Bisa01g0498 382 FunFam E3 ubiquitin-protein ligase RING1-like 188 274 - -
Bisa01g0498 382 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Bisa01g0498 382 CDD RING-H2_RNF126-like 226 268 - -
Bisa01g0498 382 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0498 Bisa-ChrBisa01 7170402 7171550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0498 185 284 C3H Transcription Factor Family AT5G15820 53.000 1.68e-34 129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g0498 01 7170402 7171550 Bisa01g0498 01 7170402 7171550 ECH