Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0478 ATGGATTACGGTGGTGGAAGCGTTGGGTCCCCTGGGGATTATCATCCCCGCCATGATGTGAGGCAGAAACGTTACCATCGTCACGCTGCTAATCAGATTCAAAGTCTAGAATCAATGTTCAAGGACTGTCCACATCCGGATGAGAAGCAGAGGTTACTGTTAAGCAGAGAGCTTGGCTTAACCCCTAGACAGATCAAGTTTTGGTTTCAAAACAGAAGGACTCAGATGAAGGCTCAGCATGAAAGAGCTGATAACTGTGCATTACGAGCGGAGAATGACAAGATAAGATGTGAGAACATAGCCATCAGAGAGGCTTTAAAAAACGTTATATGCCCTTCTTGCGGTGGCCCTCCTCCTCTCACTGACGATTCCTATTTTGATGAGCAAAAGTTGCGTTTGGAGAATGCTCAGTTGAAAGAAGAGCTAGATAGAGTATCTAGCATTGCTGCTAAGTACATAGGAAGACCAATCTCTCTGCTCCCTCCAGTTCAGCCTATTCATATATCATCTCTGGACTTAACAATGGGAAGTTTTGGGAGTCAAGGGCTTGGTGTTCCTTCCCTTGATCTTGATCTTCTCACTGGAAGTTCTTCGTACGCGCAAAATTTGCCATATCAACCTGCTACTGCCATGGACAAGTCCATAATGTCTGACATTGCTGCTAATGCCATGGAGGAACTACTCAGGCTTCTGCAGACCAATGAACCATTGTGGATGAAGTCATCAAACACAGATGGGAGAGATGTCCTTAATCTTGAAACATACGAAAGAATGTTCCCAAAAGCAAATAGTCACTTGAAGAATCCTGTTGTGCGGATTGAAGCATCCAGAGATTCAGGAGTTGTGATCATGAATGGTTTAACTTTGGTTGACAAGTTTATGGACCCGAACAAGTGGATGGAGTTGTTTCCCACAATTGTCACAATGGCGAGAACAATTGAAGTGATATCTTCTGGGATGTTGGGTGGTCATAGTGGTTCTTTGCAATTGATGTATGGAGAGTTGCAAGTGCTTTCTCCACTAGTTCCAACTAGAGAGTTTTACTTCCTGCGTTACTGCCAGCAAATTGAGCAAGGCTTATGGGCAATAGTAGATGTTTCTTATGATTTTCCCCATGACAGCCAATTTGCTCCTCAATTTCGGTCTCGTCGGTTTCCATCAGGCTGCTTGATCCAAGACATGCCCAATGGGTATTCCAAGGTTACTTGGGTTGAACACACGGAGATTGAAGAAAAAACTCCGACTCATAGGCTATATAGAGATCTTATCTATAGTGGAATGGCATTTGGAGCAGAAAGATGGCTCACTACTCTTCAGAGAATGTGTGAAAGATTTGCTTGTCTAATGGTGGCAGGCAATTCAACCCGGGATCTCGGAGGAGTGATTCCAACCCCGGAAGGCAAGAGGAGCTTGATGAAACTTGCTCAAAGAATGGTCACAAGTTTCTGTGCAAGCATTAGCACATCAAGTGGTCACGGTTGGGCAACACTTTCTGGATTGAATGAAGCTGGAGTCAGAGTCAGTGTTCATAAAAGCACTGATCCTGGCCAGCCTAATGGGGTAGTGTTGAGTGCTGCAACTACCATTTGGCTCCCTCTTCCTCCACAGACAGTGTTCAATTTCTTGAAGGATGAAGCGAATAGACCTCAGTGGGATGTCCTTTCAAACGGTAATGCCGTGCAAGAGGTAGCTCACATAGCAAATGGATCACACCCTGGAAATTCCATATCTGTTCTTAGAGCTTTCAACACAAGCCAGAACAACATGCTTGTACTGCAAGAAACCTGCATAGACTCCTCTTGTTCCCTTGTGGTGTATTCCTCAGTTGACTTCCCAGCCATTAACATAGCTATGAGTGGAGAAGACCCTTCATATATTCCTCTCCTCCCTTCTGGTTTCACCATTTCACCTGATGGCCAATCTGATCAAGAAGCATCAACAAGCTCAATAACACATAGGAACAACTATACAGAGAGGTCTGGCTCTGGGGGATCATTAGTCACAGTGGCTTTTCAGATCCTAGTCAGCAGCTTGCCATCAGCTAAGTTAAACATGGAGTCTGTGACAACTGTTAATAACCTTATCACCACCACTGTGCAGCAAGTAAAGACGGCCTTGAATTGGTGGAATAAGTATTTAGGGTTAGTTGGGGAACTACGAACGGTGTATGATGAAAGAGCAGAAGAAAGGCTCTGTTTATTTACTGCTGCTGCTGCTGGTAGAGCTGGTTTTGCTGCTGAAGGTTAA 2247 0.4459 MDYGGGSVGSPGDYHPRHDVRQKRYHRHAANQIQSLESMFKDCPHPDEKQRLLLSRELGLTPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPPLTDDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISLLPPVQPIHISSLDLTMGSFGSQGLGVPSLDLDLLTGSSSYAQNLPYQPATAMDKSIMSDIAANAMEELLRLLQTNEPLWMKSSNTDGRDVLNLETYERMFPKANSHLKNPVVRIEASRDSGVVIMNGLTLVDKFMDPNKWMELFPTIVTMARTIEVISSGMLGGHSGSLQLMYGELQVLSPLVPTREFYFLRYCQQIEQGLWAIVDVSYDFPHDSQFAPQFRSRRFPSGCLIQDMPNGYSKVTWVEHTEIEEKTPTHRLYRDLIYSGMAFGAERWLTTLQRMCERFACLMVAGNSTRDLGGVIPTPEGKRSLMKLAQRMVTSFCASISTSSGHGWATLSGLNEAGVRVSVHKSTDPGQPNGVVLSAATTIWLPLPPQTVFNFLKDEANRPQWDVLSNGNAVQEVAHIANGSHPGNSISVLRAFNTSQNNMLVLQETCIDSSCSLVVYSSVDFPAINIAMSGEDPSYIPLLPSGFTISPDGQSDQEASTSSITHRNNYTERSGSGGSLVTVAFQILVSSLPSAKLNMESVTTVNNLITTTVQQVKTALNWWNKYLGLVGELRTVYDERAEERLCLFTAAAAGRAGFAAEG 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0478 748 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 707 IPR042160 -
Bisa01g0478 748 SUPERFAMILY Bet v1-like 211 445 - -
Bisa01g0478 748 CDD homeodomain 21 80 IPR001356 GO:0003677
Bisa01g0478 748 Pfam Homeodomain 23 77 IPR001356 GO:0003677
Bisa01g0478 748 CDD START_ArGLABRA2_like 213 443 - -
Bisa01g0478 748 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Bisa01g0478 748 ProSitePatterns 'Homeobox' domain signature. 54 77 IPR017970 GO:0000981|GO:0006355
Bisa01g0478 748 SMART START_1 218 444 IPR002913 GO:0008289
Bisa01g0478 748 Coils Coil 128 148 - -
Bisa01g0478 748 MobiDBLite consensus disorder prediction 637 657 - -
Bisa01g0478 748 Gene3D - 13 93 - -
Bisa01g0478 748 FunFam Homeobox-leucine zipper protein GLABRA 2 218 443 - -
Bisa01g0478 748 Gene3D - 216 444 IPR023393 -
Bisa01g0478 748 Pfam START domain 219 444 IPR002913 GO:0008289
Bisa01g0478 748 SUPERFAMILY Bet v1-like 464 703 - -
Bisa01g0478 748 SMART HOX_1 21 83 IPR001356 GO:0003677
Bisa01g0478 748 SUPERFAMILY Homeodomain-like 15 82 IPR009057 -
Bisa01g0478 748 FunFam Homeobox-leucine zipper protein HDG1 12 95 - -
Bisa01g0478 748 ProSiteProfiles START domain profile. 209 447 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0478 Bisa-ChrBisa01 6943966 6947866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0478 19 707 Homeobox Transcription Factor Family AT1G73360 65.714 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa01g0478 START 9e-50 CL0209