Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0472 ATGTTAGACAGTAAGTCCCCCACTTCTGAACCCTTCCCCTGCAGTGACAATGGTACCACTATCCCTGCCAATAAAAGAAAGAGAAGACCTGCCGGAACTCCAGATCCGGATGCGGAGGTGGTGTCGTTGTCGCCGAAGACGTTGTTGGAGTCGGACCGTTACGTGTGCGAGATCTGCAACCAGGGGTTTCAGAGGGACCAGAACCTGCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTGCTGAAGCGGGAGACGCCGGCGGCGAGGAAGCGCGTGTTCGTGTGCCCCGAGCCCACATGCTTGCACCACGACCCCTCCCACGCCCTCGGCGACCTCGTCGGCATCAAGAAGCACTTCCGCCGCAAGCACAGCAACCACAAGCAATGGGCCTGCCACCGCTGCTCCAAGGCCTACGCCGTCCACTCCGATTTCAAGGCCCATCTCAAAACCTGCGGCACACGTGGCCACTCCTGCGATTGTGGTCGCGTCTTCTCAAGGGTGGAGAGCTTTATCGAACACCAAGATGCCTGTAATTTGGGGAAGCTCCGGCCAGAGCCGCAGCCGGCGGCGCCAGCATGCTTGTCGCGAACAGCTTCCAGCCCGAGCCCATCGAGCGAGACCAATTTCAGCACGGGTCCTAATAACTGGCATGGTCTAGTGATGGCGAAGGCAACCGAACCCACATTGTTGAACCCTATTAGTGTCACTGCTGAAACCTCATCGAAGAAGAATCATAGTAAAGTTTGCCCAAACTTGGACCTTCAGCTCTCCACCACCACCACTTCTTCCATTATTCCCATTGATATAACAGCTGCATCGCCTAAAAGAGACGAGACCCGTTCTACTACCCACCTACAACTCTCAATCGGGTCGTCGGAGATCGCCGAGAAAAATGAATCCAACAGCTTCAACAATCGCAGGAAAAATTCCCCCAAGGGGAGTAGCAACAGCAGTGACAAACTGCAAGGTGCAGCGTTGAGGGTTTTCGAACGCGAGCAGTTGATGAGGTTAGCGATGGCGGAGAAGGCATATGCAGAGGAAGCAAGGAAAGATGCGAAGAGACAGATAGAAGTGGCGGAGAAGGAGTTCGCCAACGCCAAGAGGATCAGACAAGAAGCCCAAGCAGAACTGGACAAAGCCTATGCCTTAAAAGAACATGCCATCAAGCAGATCAACTCCACTATGCTTGAGATCACTTGCCATGCTTGCAAACGACAATTCCATCAAGCTCAACCCACAGCATTAATCACGGCATTTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCTCAGGATCACGAGAACTCTTTGGTGTTAAGCTACATGTCGTCTGCCATAACAACCGAAGGTGGCGAAGTGCAGAACTACAACAGTAATGGGAAGAAATATCATGGGAAAACTACTACTGCTAACTCTATATCTATCTAG 1434 0.5342 MLDSKSPTSEPFPCSDNGTTIPANKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAARKRVFVCPEPTCLHHDPSHALGDLVGIKKHFRRKHSNHKQWACHRCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLGKLRPEPQPAAPACLSRTASSPSPSSETNFSTGPNNWHGLVMAKATEPTLLNPISVTAETSSKKNHSKVCPNLDLQLSTTTTSSIIPIDITAASPKRDETRSTTHLQLSIGSSEIAEKNESNSFNNRRKNSPKGSSNSSDKLQGAALRVFEREQLMRLAMAEKAYAEEARKDAKRQIEVAEKEFANAKRIRQEAQAELDKAYALKEHAIKQINSTMLEITCHACKRQFHQAQPTALITAFPPPPPLPLPPPQDHENSLVLSYMSSAITTEGGEVQNYNSNGKKYHGKTTTANSISI 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0472 477 Coils Coil 344 392 - -
Bisa01g0472 477 MobiDBLite consensus disorder prediction 195 217 - -
Bisa01g0472 477 SMART c2h2final6 131 158 IPR013087 -
Bisa01g0472 477 SMART c2h2final6 54 76 IPR013087 -
Bisa01g0472 477 SMART c2h2final6 95 125 IPR013087 -
Bisa01g0472 477 MobiDBLite consensus disorder prediction 285 323 - -
Bisa01g0472 477 MobiDBLite consensus disorder prediction 190 219 - -
Bisa01g0472 477 Gene3D Classic Zinc Finger 32 96 - -
Bisa01g0472 477 MobiDBLite consensus disorder prediction 1 21 - -
Bisa01g0472 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Bisa01g0472 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 401 IPR031140 -
Bisa01g0472 477 MobiDBLite consensus disorder prediction 275 323 - -
Bisa01g0472 477 SUPERFAMILY beta-beta-alpha zinc fingers 51 77 IPR036236 -
Bisa01g0472 477 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Bisa01g0472 477 MobiDBLite consensus disorder prediction 1 40 - -
Bisa01g0472 477 FunFam protein indeterminate-domain 12-like 33 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0472 Bisa-ChrBisa01 6854152 6856967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0472 16 457 C2H2 Transcription Factor Family AT2G01940 52.505 1.21e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa01g0472 None None None