Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0466 ATGCTTCTCTTGAATTCTTCTTCTGTTTCAAACTTTGAACACTCCGTACGAAACAGAGGGGACCTGTATTTATGGCAGGAACCACATATAAGAGCCTCACACGCGCAGACGCAGAGACCCCAATCCAATACTCGCATCAATTCTCATACCGACTTTCAGACTTGGATTATCAAATCACACAAACTAACTCTCGTCACAATAGCTTCCTTGGCTACTTTTCTCAGATTTCTTCTCCTTCGATCTGCACAAATGGTGTTAGGATGGAGAAGAAGGAAGAAGAACACTAAACCTGACTCGGTGCTTCTGATTCCGAACCATTTCAAATGCCCAATTTCTATCGATCTGATGAAGGATCCTGTCACGATATCTACCGGTATCACCTACGATCGAGAGAGCATCGAACGGTGGTTCGAAGAGGGGAATTTCACGTGCCCTGTCACCAATCAGATTCTTACAAGCTTCGATCTCATCCCAAATCATACGCTTAGGGTTATGATTCAGGAATGGTGCGTCGAGAATCGACAATTTGGGATCGAAAGAATTCCAACTCCTAGAATACCCGTTACTCCAATCGAAATCACAGAGGTCCTTCTTCACCTTAAGGCCTCAGCAACGCGGTTGGATCGATACGGCTTCTTAGAATCGGTTCAGAAAATGGAGAAATGGAGTCTCGAGAGCGAGAGAAACAGAAAGTGTATTGTGGAGAATGGGACTCCTGCTGCATTAGCCTCTGCATTTCTTGCGTTTGCGAGTGATTCTATTGAGGAAAACGTGAATGCGTTGGAGGAGATTTTGTGTGCCCTAAATTGGATGCTTCCGCTTCAATTCGAAGCCCAGAAGATTTTGGGATCTTCAGATTGTTTGCGTTGCTTGGTTTGGTTCTTGAAGCACCAAGATCTTTCTGGAAAACAGAACGCCATTGTTTCTTTGAGGGAGCTCCTTTCTTCTGGTGACGAGCAGAATTTGGAGAATATGGCAGAAATTGAAGGGGCCAATGAGCTATTAGTGGAGTTCATTAACAAGAGAATTAGCCCAACAATCACAAAAGCTTCATTGGGGATTGTTTATTATTTAGTTTCATCTTCTTATCCATCAAGTGAGAAGGTGAAGCTGGAGTTCATTGAACTGGGTTTGGTTTCTTCGCTTCTGGAGATTCTAACTGACACAGAGAAGAGCTTATGTGAGAAGGCTTTAGGTATTTTTGATTCAATATGCAGCTGTAAAAGAGGAAGAGAAAAAGCTCATAGTAATGCTCTGACTGTTCCTATATTGGTGAAGAAGATTTTGAGGGTTTCAACTTTGGCAACAGATTACTCTGTGTCTGCTATATGGAAGCTGTGCCGAAATGGAGATAAAGATGAAGAAGTAGAAGAAGAAAAGGCTTTGGTTGAGGCAGTTCAAGTTGGTGCATTTCAGAAGCTGTTGGTGGTGTTGCAGGTTGGGTGTGGTGATGAGACGAAGGAGAAAGCAACTGAGCTTCTCAAATTGTTGAATCCTCATAGAGCTGGCTTGGAGTGCATAGATTCAGATTTCAAGAATCTTCAGAGATCATTTTGA 1557 0.429 MLLLNSSSVSNFEHSVRNRGDLYLWQEPHIRASHAQTQRPQSNTRINSHTDFQTWIIKSHKLTLVTIASLATFLRFLLLRSAQMVLGWRRRKKNTKPDSVLLIPNHFKCPISIDLMKDPVTISTGITYDRESIERWFEEGNFTCPVTNQILTSFDLIPNHTLRVMIQEWCVENRQFGIERIPTPRIPVTPIEITEVLLHLKASATRLDRYGFLESVQKMEKWSLESERNRKCIVENGTPAALASAFLAFASDSIEENVNALEEILCALNWMLPLQFEAQKILGSSDCLRCLVWFLKHQDLSGKQNAIVSLRELLSSGDEQNLENMAEIEGANELLVEFINKRISPTITKASLGIVYYLVSSSYPSSEKVKLEFIELGLVSSLLEILTDTEKSLCEKALGIFDSICSCKRGREKAHSNALTVPILVKKILRVSTLATDYSVSAIWKLCRNGDKDEEVEEEKALVEAVQVGAFQKLLVVLQVGCGDETKEKATELLKLLNPHRAGLECIDSDFKNLQRSF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0466 518 ProSiteProfiles U-box domain profile. 102 176 IPR003613 GO:0004842|GO:0016567
Bisa01g0466 518 FunFam RING-type E3 ubiquitin transferase 103 174 - -
Bisa01g0466 518 PANTHER WDSAM1 PROTEIN 102 500 IPR045185 GO:0061630
Bisa01g0466 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 179 IPR013083 -
Bisa01g0466 518 SUPERFAMILY ARM repeat 256 460 IPR016024 -
Bisa01g0466 518 SMART Ubox_2 106 169 IPR003613 GO:0004842|GO:0016567
Bisa01g0466 518 SUPERFAMILY RING/U-box 99 179 - -
Bisa01g0466 518 Gene3D - 216 509 IPR011989 -
Bisa01g0466 518 Pfam U-box domain 103 174 IPR003613 GO:0004842|GO:0016567
Bisa01g0466 518 CDD RING-Ubox_PUB 104 156 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0466 Bisa-ChrBisa01 6707091 6708647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0466 85 518 U-box Gene Family AT5G37490 45.995 8.56e-116 347