LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g0443	ATGAATTCGAATTACGGCAAACCCAATCAACCGAAAGGTTCATCTGTCTCGCTGAACAATTTCAATTTCGACTTTGATCTCGGGATCGGATCGAATCGATCCAAATCTCTCAACGATCAGAAAAACCAGAAATCCCCCTATTCATACTCCTCCTCCTCCTCCTCTTCTTCTTCCACATACCCGTCTGCGCAACCCAGACCCGCGTGGCAACCGAACAAGCCGTCATGGACTCACCAGCCGGCTCCGAATCTGGCGGCTCAGCCCGGATTACCGGGTGGACCCACTTCAATGGTTGGGGATATCTTTGGCAAGAGTTGGGGATCGACCCAGCCTTCGGGTTCGAGTTCGACTATTGGAGTCGTCAATAAAAACCCTAATCTCTTTGGAGATTTGGTAGGCTCTGCTCTAGGGAAGGATTCTAAGAGTAGCAGTAATGCTCCTCTGAAAAACTCGACGCCTGTTTCGAAGGTATCAGGTACAACATCGAACAAGAGTTATTTTTCAATGGGAAATATGGCAGATTCTTTGCCTAAAACTAGTAATACGTCGCAAAACAGTGGAGGCTGGGGATCTTCGGGGTACAATAATAGTAGTATGAGCGCCAATAAGAGTCCAAATCTTGGGGGTTCTTCAATGCGAAGTATGAATAGTGGTGGTTCAGCTGGAAGCGGAATGAACGTTAATAAAGATCCATTTAGCTCTTTGGCTGGCTTTGGATCGAAACAATCTGGTGGTAGTCTTAATTCAGCGGGTAAGGGCGCAAAGAGTAATAATACAAACGATAATAGTTTTGGAGATTTCCAGAATGCTTCCAAACCAAGCCCTACCACATTCCCTTCAAGTACTTCTACAGCCGATGATTTCGGTTTTTCTGGATCTACCAATCTGAATCAGAAACCTGTGCAGTCATCCGGTGGTGGTGACCCTATGGACATGTTTTTCTCATCTTCCTCTGTCTCAGCTGGAAGTGCTAATGTGGCCTCTGAAGGATTTGGAGGAAAATCCTCTTCTGAAATTGATGATTGGGGTTTAGATACTGAGTTTGGTGGGGGAGGCCATGATGTGGGTGGTTCAACCACTGAGCTTGAAGGGCTTCCACCTCCTCCTGCTGGGGTATCAGGTTCATCAGCTAAAGGTAAGGGGATGGACAATTACAAGCAGGGGCAGTTTGCTGATGCTATTAAGTGGCTGTCCTGGGCTGTCATTCTTCTTGAGAAGGCAGGGGATAATGCTGGCGCAGCGGAGGTTTTGACATGCAGGGCTTCATGTTACAAAGAAGTTGGGGAGTATAAAAAAGCAGTAGCAGATTGTACGAAGGTGCTTGAAAACGATGAGACAAATGTATCTGTCCTGGTACAACGTGCTCTCTTCTATGAGAGTATGGAAAAGTACAAACTTGGTGCTGAAGACCTGAGGACTGTTCTGAAGATTGATCCTAGCAATAGGGTTGCAAGAAGCACCATTCACCGGTTAACAAAGCTTGCCGATTAG	1491	0.4648	MNSNYGKPNQPKGSSVSLNNFNFDFDLGIGSNRSKSLNDQKNQKSPYSYSSSSSSSSSTYPSAQPRPAWQPNKPSWTHQPAPNLAAQPGLPGGPTSMVGDIFGKSWGSTQPSGSSSTIGVVNKNPNLFGDLVGSALGKDSKSSSNAPLKNSTPVSKVSGTTSNKSYFSMGNMADSLPKTSNTSQNSGGWGSSGYNNSSMSANKSPNLGGSSMRSMNSGGSAGSGMNVNKDPFSSLAGFGSKQSGGSLNSAGKGAKSNNTNDNSFGDFQNASKPSPTTFPSSTSTADDFGFSGSTNLNQKPVQSSGGGDPMDMFFSSSSVSAGSANVASEGFGGKSSSEIDDWGLDTEFGGGGHDVGGSTTELEGLPPPPAGVSGSSAKGKGMDNYKQGQFADAIKWLSWAVILLEKAGDNAGAAEVLTCRASCYKEVGEYKKAVADCTKVLENDETNVSVLVQRALFYESMEKYKLGAEDLRTVLKIDPSNRVARSTIHRLTKLAD	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g0443	496	MobiDBLite	consensus disorder prediction	1	314	-	-
	Bisa01g0443	496	MobiDBLite	consensus disorder prediction	137	314	-	-
	Bisa01g0443	496	SUPERFAMILY	TPR-like	378	488	IPR011990	GO:0005515
	Bisa01g0443	496	Gene3D	Tetratricopeptide repeat domain	374	495	IPR011990	GO:0005515
	Bisa01g0443	496	Pfam	Tetratricopeptide repeat	420	446	IPR019734	GO:0005515
	Bisa01g0443	496	Pfam	Tetratricopeptide repeat	450	481	IPR019734	GO:0005515
	Bisa01g0443	496	MobiDBLite	consensus disorder prediction	1	82	-	-
	Bisa01g0443	496	MobiDBLite	consensus disorder prediction	102	123	-	-
	Bisa01g0443	496	SMART	tpr_5	374	407	IPR019734	GO:0005515
	Bisa01g0443	496	SMART	tpr_5	448	481	IPR019734	GO:0005515
	Bisa01g0443	496	SMART	tpr_5	414	447	IPR019734	GO:0005515
	Bisa01g0443	496	PANTHER	OS03G0340700 PROTEIN	1	496	-	-
	Bisa01g0443	496	MobiDBLite	consensus disorder prediction	345	379	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g0443	Bisa-ChrBisa01	6333315	6335259	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g0443	389	491	Calmodulin-binding Proteins	AT3G25230	33.019	1.00e-09	58.9