Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0388 ATGTCAGGGTTTTCCAAGCAACTTGTGAAACAAGAAACAAAAAATTTAACTTCTATGAGAAAGATTCGAGTTTTATACACTGACCCAGATGCCACAGATTACTCAAGCGAAGAAGATGGTGAATCTTCGAAAAACGGCTATCAACTGGACGGGTCTAAGCGATTTGTAAAGGAGATTTTGGTCCCCATGAAATCATGTGCAAGAAAGATAAAAAAAGATCCCAGTTTTGTTGGTAGCTGCAGCAAGAGAAATCAGAAATCGTCGAGCTTCAGAGGGGTACGACGTCGTAAATGGGGGACCTACGTGGCGGAGATCCGAGACCCTTTTCGAGGTGTCCGACTATGGCTGGGAACTTACAGTACCGAGAAAGAGGCTGCAATGGTTTATGAGAGAAAGAAGGAGGAGTTTGAGAGGTTAGAGTCAGAAATATTGTTCCCCCATTCATCCCCATCGTCTGTGCTCGAAGCTCCTGTGAAGAAAGAGAAGGCAAGCACAGAAGCAACTAGTGAAGAAGGTGATGTAGCAGTGGAGGCATATTCTGAAGATGGTGACTCAATTCAACATCTGTTAGAAGAGCCAGTTATGCCATCGTTGGAGAACAGAGAAATACAGTTTGGTGATACTTCTGGTTATTTCTTCAACAATGGCATCGATGCAGATGTGGAAAATGGTGAAGGAATCAGTCTACCTCCACCTGTGGAAAGTGATTTTAGTGTTCCAGAGTTGGCTTGGATCAATGAAGCTCTCAACTATGAATGGCCTTAA 765 0.4353 MSGFSKQLVKQETKNLTSMRKIRVLYTDPDATDYSSEEDGESSKNGYQLDGSKRFVKEILVPMKSCARKIKKDPSFVGSCSKRNQKSSSFRGVRRRKWGTYVAEIRDPFRGVRLWLGTYSTEKEAAMVYERKKEEFERLESEILFPHSSPSSVLEAPVKKEKASTEATSEEGDVAVEAYSEDGDSIQHLLEEPVMPSLENREIQFGDTSGYFFNNGIDADVENGEGISLPPPVESDFSVPELAWINEALNYEWP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0388 254 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 168 - -
Bisa01g0388 254 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Bisa01g0388 254 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Bisa01g0388 254 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Bisa01g0388 254 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Bisa01g0388 254 Coils Coil 122 142 - -
Bisa01g0388 254 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Bisa01g0388 254 Pfam AP2 domain 89 137 IPR001471 GO:0003700|GO:0006355
Bisa01g0388 254 CDD AP2 88 148 IPR001471 GO:0003700|GO:0006355
Bisa01g0388 254 SUPERFAMILY DNA-binding domain 88 137 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0388 Bisa-ChrBisa01 5326790 5327554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0388 1 139 AP2-EREBP Transcription Factor Family AT1G68550 34.615 5.16e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa01g0388 AP2 2e-08 CL0081