LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g0374	ATGGAAAACAAGAAGGCGTCAAAAACCGACGTCGTTCTGCAAATTCCAGAAAAGGAAGAAGCTCTCTACGCCAAGAAAGAACCCCAGATGGATTCCTCGCCGGAGATAAGAAACGTGAGCCCCAAACCCAACAAGCCCCCAGAAACTCCGATTGAGACAATAAACAAACGACGGTTGCTGTCAAGGTCGGAGTTCTCGAAGCCAAAATCCAGATTGGTGGAGCCACCATATCCAGCAGACCCAAACTTGATCGAAGGAAGAACCCAAATCATGAGTTCTAATACATCTAACAGAAATTCTCCTCACATTGCTTCTCCTAACAACAGAACTATAACTCCAGTCACCCCGCCAACACCCTTGAATGGGATGCCAGGAGAAGATGAAGATGATGACGAAGAAGTGTATAAAACTGTTGATCTTGAAGTGAGCAAGAGGTCAGGTAAGAAAAAGTGGAAATTTATGGCTTTGATCGAATGGGTAGCTTTTGTTTGCATTGTGGGTGCTATGATTACAAGCTTGACCATCCATAATCTGCAAAATAGCGTGATTTGGAGTTTGAAGCTATGGAAATGGTGTGTCTTAGCGTTGGTTATCCTCTGTGGTAGAATAATCACAGAGTGGTTTATGAACATCCTGGTTTTTCTGTGTGAGAGAAACTTCTTGTTCAAAAAGAAGGTTCTCTACTTTGTCTATGAATTAAAGAAGTGTGTTCAGGCCTTCATTTGGTTAGCGTTGGTTCTTCTGACATGGTTTCTACTCTTCAATCATGGAGTTAAGAGATCCAAAAGGACTACAAGGATACTCAATTACATATCCAGAGCCCTTGCTTCTTGCCTTATAGGAGCAGCTATATGGCTATTGAAAACTCTGTTGATAAAGTTATTAGCGTCTTCTTTCCAATGCAGCAGATTCTTTGACAGGATCCAAGAATCAATCTTTCACCAGTACATTCTTCGGATTCTCTCGGGACGTGCATTGATGGAGGTGGCTGAAATGGTGGGGAAGACGGCGAGCCCTGGTCAGTTGAGTTTTAGGACTTTGAACAGAGAGAATGCAGGTGAGAAAGAAGAGGTCATTGATGTGGACAAGTTGAAGAAGATGAAACAAGACAAGGTTTCTGCTTGGACAATGAGAGGGTTGATTCATGTGATCAGCAGCTCTGGGTTGTCCACCATATCTGATACACTCGAGTGTTTCAATGAAGAAGAAGCAGAGCAGAAAGACAAGGAAATTAACAGTGAGTGGGAAGCAAAAGCAGCTGCTTACAGAATTTTCGATAATGTAGCCAAACCAGGAAGCACGTACATCGATGAGGAGGATCTCTTGAGATTTATGAGCAAAGAGGAGGTGGAGAATGTGCTTCCTCTGTTTGAAGGAGCTGTGGAAACCGGAAAGATAAAGAGGAAGTCCCTCAAGAACTGGCTGGTAAAAATATACCTGGAATGGAAATCACTGGTGCATTCCTTAAATGACACGAAGACGGTCGTTCATGAGCTGAACAAGCTGGTTTCAGTGATTGTCCTTGTTCTGATCGTCATCGTTTGGCTACTTCTGATGGGGTTCCTAACGATAAAAGTGCTGGTCTTAATTTCATCCCAGCTATTTCTTGCTGGGTTCATGTTTGGCAACACAGCCAAGACTCTGTTTGAAGCCATCATTTTTGTGTTCGTGAAGCACCCTTTTGACGTCGGAGATCGCTGTGTCATTGATGATGTACACATGATTGTAGAAGAGATGAATATATTGACGACAGTGTTCTTGAGATACGATGACGAGAAGATATTCTATCCAAACTCAGTTCTAGCGACCAAACCGATCAGCAACTTTTACAGGAGCCCAGAGATGAGCGACTCCGTTGAATTTGCCATCCATCTTTCTACCTCCATGGAGACTATTGGTGCTTTAAAAGCTAGAATCAAAGCATACTTGGAAAACAGGCCTCAGTACTGGCGTCCTGGATGCAGCGTGGTGGTTAAGAACATAGAGAACGTGAACAAGATGAGTATGGGTCTGTATGTGACTCACACCATAAATTTCCAAAACTATGGAGATAAGAGCAGCCGAAGATCCGAACTGGTGTTGGAACTCAAGAAAATTTTCCAAGATCTTAATATTACATACCATCTTCTACCACAAGATGTTCATCTCACTTCTGACATAGACAAATATGCCAAAATTTCCACCACTCGTTCCTCCCTTGCCCCCTCCACCGTCTCTCTCAAAACACACACATCAAATCCCTCCCTCTCTTTAACACAAGTTTCAGCGAACCACCAAGTAGCAGTTGGCAGAGGAGGAAGAGGAAGAAGAACAAGTATTACACCAATGGCTTCAACTTCCGCAGTTTCCATGGCTATGCCACCAGCTTACGCCACCCAGAAGAAGGTGGTGCCCAGCTCCGACTCATTTTTCAAGCCACTGCCTCTCCGGGCTTCAAGGAAGGTGGCTGCATCATCAAAGCCCAACTCAAGGTTTGAAGTCAGGGCCTCCCTGAAGGAGAAGGCCGTCACTGGTCTCACGGCGGCTGCCTTGACCGCCTCCATGATGGTTCCCGACGTGGCTGAAGCCGCCGTCACGCCGTCCCTCAAGAACTTCTTGCTCAGCATCGTCGCTGGTGGAGTCGTGGTTGCGGCCATTGTGGGCGCCGTCATCGGTGTTTCCAATTTCGATCCCGTCAAGCGAAGCTGA	2688	0.4524	MENKKASKTDVVLQIPEKEEALYAKKEPQMDSSPEIRNVSPKPNKPPETPIETINKRRLLSRSEFSKPKSRLVEPPYPADPNLIEGRTQIMSSNTSNRNSPHIASPNNRTITPVTPPTPLNGMPGEDEDDDEEVYKTVDLEVSKRSGKKKWKFMALIEWVAFVCIVGAMITSLTIHNLQNSVIWSLKLWKWCVLALVILCGRIITEWFMNILVFLCERNFLFKKKVLYFVYELKKCVQAFIWLALVLLTWFLLFNHGVKRSKRTTRILNYISRALASCLIGAAIWLLKTLLIKLLASSFQCSRFFDRIQESIFHQYILRILSGRALMEVAEMVGKTASPGQLSFRTLNRENAGEKEEVIDVDKLKKMKQDKVSAWTMRGLIHVISSSGLSTISDTLECFNEEEAEQKDKEINSEWEAKAAAYRIFDNVAKPGSTYIDEEDLLRFMSKEEVENVLPLFEGAVETGKIKRKSLKNWLVKIYLEWKSLVHSLNDTKTVVHELNKLVSVIVLVLIVIVWLLLMGFLTIKVLVLISSQLFLAGFMFGNTAKTLFEAIIFVFVKHPFDVGDRCVIDDVHMIVEEMNILTTVFLRYDDEKIFYPNSVLATKPISNFYRSPEMSDSVEFAIHLSTSMETIGALKARIKAYLENRPQYWRPGCSVVVKNIENVNKMSMGLYVTHTINFQNYGDKSSRRSELVLELKKIFQDLNITYHLLPQDVHLTSDIDKYAKISTTRSSLAPSTVSLKTHTSNPSLSLTQVSANHQVAVGRGGRGRRTSITPMASTSAVSMAMPPAYATQKKVVPSSDSFFKPLPLRASRKVAASSKPNSRFEVRASLKEKAVTGLTAAALTASMMVPDVAEAAVTPSLKNFLLSIVAGGVVVAAIVGAVIGVSNFDPVKRS	895

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g0374	895	Gene3D	Single helix bin	857	895	-	-
	Bisa01g0374	895	Gene3D	-	560	609	IPR023408	-
	Bisa01g0374	895	FunFam	Predicted mechanosensitive ion channel	560	609	-	-
	Bisa01g0374	895	Pfam	Photosystem II reaction centre X protein (PsbX)	858	895	IPR009518	GO:0009523\|GO:0015979\|GO:0016020
	Bisa01g0374	895	SUPERFAMILY	Sm-like ribonucleoproteins	550	609	IPR010920	-
	Bisa01g0374	895	MobiDBLite	consensus disorder prediction	51	69	-	-
	Bisa01g0374	895	Pfam	Mechanosensitive ion channel	500	705	IPR006685	GO:0016020\|GO:0055085
	Bisa01g0374	895	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	35	728	IPR016688	-
	Bisa01g0374	895	MobiDBLite	consensus disorder prediction	20	116	-	-
	Bisa01g0374	895	MobiDBLite	consensus disorder prediction	86	116	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g0374	Bisa-ChrBisa01	5104441	5111172	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g0374	4	717	Mechanosensitive Ion Channel Family	AT5G12080	51.591	0.0	739