LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g0372	ATGAAATTAGTGGTTGAGAGTGAAGCACCATCTGATGGACTAAGCTCCCCTCTTTGGTGTATGACGTCTATGAAGATCTGTGAAGCCCACAACTCTTGGATGGCTGTGGGCAGGATTGCCGACAAAAGCAGCCCAATCAGTAATCCATCCCAGCACAGCCTAATAGATATAAACATATCTTTCCGCTCAAAGCCCCTCTCCGGAATTAGGGTTTGCAGAGACACGAGACAAGCACTGCCACTTTTGGTGTTGAGATCTTTCGCCCCTGCATCTACCCCCGCTGCGACAATGGCAACTCAGATGAGCAAGAAGAGAAAGTTCGTTGCCGATGGAGTTTTCTTCGCCGAGCTGAACGAGGTCTTGACCCGAGAGCTTGCTGAGGATGGATACTCTGGTGTTGAGGTTAGAGTAACTCCGATGCGCACTGAGATCATTATCAGAGCCACTCGAACCCAGAACGTACTTGGCGAGAAAGGAAGGAGAATTAGGGAGTTAACCTCAGTCGTACAGAAGAGATTTAAGTTTCCAGAGAATAGCGTGGAGCTATACGCTGAGAAGGTCAACAACAGGGGTCTATGTGCTATTGCTCAGGCCGAGTCTCTTCGCTATAAGCTTCTTGGCGGTCTCGCTGTACGGAGGGCTTGCTATGGTGTTTTAAGATTCGTCATGGAAAGTGGTGCAAAGGGATGTGAGGTCATTGTAAGTGGAAAATTGAGGGCTCAGCGTGCCAAATCCATGAAGTTCAAGGATGGGTATATGATTTCTTCGGGTCAGCCAGTCAAAGATTATATTGATTCTGCCGTAAGACATGTACTTCTCAGACAGGGGGTTCTTGGTATCAAGGTCAGGATCATGCTTGACTGGGACCCTAAAGGGAAGCAGGGTCCTAAAACTCCCCTTCCTGATATTGTTACAATCCACCCTCCAAAGGAGGAAGAAGAATACATTCGTCCTGCTGCTATTGTGGCAACTGATATTGAGGTCCCAGTGGCTGTGGCTTGA	1002	0.482	MKLVVESEAPSDGLSSPLWCMTSMKICEAHNSWMAVGRIADKSSPISNPSQHSLIDINISFRSKPLSGIRVCRDTRQALPLLVLRSFAPASTPAATMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVRIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEYIRPAAIVATDIEVPVAVA	333

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g0372	333	CDD	KH-II_40S_S3	101	191	-	-
	Bisa01g0372	333	NCBIfam	30S ribosomal protein S3	104	306	IPR005703	GO:0003735\|GO:0006412\|GO:0015935
	Bisa01g0372	333	ProSitePatterns	Ribosomal protein S3 signature.	243	279	IPR018280	-
	Bisa01g0372	333	Gene3D	-	189	315	IPR036419	-
	Bisa01g0372	333	SUPERFAMILY	Prokaryotic type KH domain (KH-domain type II)	106	195	IPR009019	GO:0003723
	Bisa01g0372	333	Pfam	KH domain	116	189	IPR004044	GO:0003723
	Bisa01g0372	333	Pfam	Ribosomal protein S3, C-terminal domain	202	284	IPR001351	GO:0003735\|GO:0006412
	Bisa01g0372	333	FunFam	40S ribosomal protein S3	97	188	-	-
	Bisa01g0372	333	ProSiteProfiles	Type-2 KH domain profile.	117	188	IPR004044	GO:0003723
	Bisa01g0372	333	PANTHER	30S/40S RIBOSOMAL PROTEIN S3	102	294	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g0372	Bisa-ChrBisa01	5095774	5099611	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g0372	97	331	Cytoplasmic Ribosomal Protein Gene Family	AT5G35530	87.660	5.69e-153	427

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