Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0350 ATGATGGATGTTGCCGAGGTGGAAGAAACTCTATTTGCAGCAAGTGATGCCAAGTTACATGGAGAATTGTACAAGGCTCTTTCAGCAACATATTACAAAGTATTGTCAATATTTCCGTCCTTGGAAGCAGCTAGGCCTAGGAGCAAATCTGGCATTCAGGCATTATGTTCATTGCATGTGGCCTTAGAGAAGGCCAAGAACGTTCTTCAGCATTGCTCAGAGTGCAGTAAGCTTTATTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCCAAAGGTGTTCTTGGAAAAAGTCTCAGACGGGTGGAGGATATTGTTCCGCAGTCTATTGCGTGTCAGATTCAGGAGATAGTGAATGAAATCGAAAGTATGGAATTTGCACTTGACCCATCAGAGAAGCAAATCGGTGATGATTTAATTGCTTTGCTCCAGCAGGGGAGAAAGTTTAACAACTCTAACGACAGTAGCGAGCTTGAATGTTTTCACCAGGCTGCCAATAGACTTGGAATCACATCTTCAAGAGCAGCTCTTACTGAAAGAAGAGCCCTCAAGAAACATATAGAAAGAGCTCGGGCTGAGGAAGATAAGCGGAAGGAATCCATTGTTGCCTATCTTTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTTTCAGATGATAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTTTGGGCTCTTTTGAGGACGGTGTTGCTGGTGGTCATTACCAGGCCTTTGACAGACAGCTTTCAAAACTTAGTTCTTTTAATTTTAGGCCAACTAATAGGAGATCAGGGCAAATGCCCCTTCCACCAGAAGAGTTAAGGTGTCCAATATCTCTTCAACTTATGTACGATCCCGTCATAATTGCTTCTGGGCAAACATATGAGAGGGTTTGTATAGAGAAATGGTTATGTGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTAGCACATCTGTCATTGACTCCTAATTACTGTGTTAAGGGTCTTGTTACTAGTTGGTGTGAACAAAATGGAGTTCCAATTCCCGATGGTCCTCCTGAATCTCTTGACCTTAACTACTGGAGATTAGCATTATCTGAATCTGAATCAACAAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAATTGAAGGGTGTCAAAGTTGTTCCTTTAGAAGAGAGTAGTGTCTCACAGGAAAATGGAGAAAATGGAACCGAAAGTGTGTCTGCACAAGAGGAAGATACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAAGGGAACAATTGGAAGAGAAAATGTAAAGTGGTAGATCGGTTAAGGCTGTTGCTGAAAGATGATGAAGAAGCCAGGATTTTTATGGGTGCCAATGGGTTTGTTGAAGCACTATTGCAGTTTCTGAACTCAGCAGTGTGTGAAGGGAATGTCATGGCTCAAGAAAGTGGAGCAATGGCTCTCTTTAATCTTGCTGTGAATAACAACAGAAATAAGGAAATTATGTTAGCAGCAGGAATATTATCATTGTTGGAGGAAATGATTTCTAATTCCAGTTCTTATGGTTGTGCTACGGCCCTCTATCTGAACCTCTCTTGCCTTGAAGAGGCCAAGCGTATGATTGGCTCAAGTCAGGCTGTCCAGTTCCTCATCCATCTTCTCCTTCAACCTGACATTGACGTCCAGTGCAAGCAAGATTCTCTCCATGCACTCTATTATCTATCTACCATCCCCTCCAACATTCCAAACCTCCTTCAATCTGGCATCATCAATGGCCTTCAATCCCTTCTTGCAGGCCAGGGTGATTGCATGTGGACGGAAAAATGCATAGCTGTTTTGATCAATTTGGCTGCTTCTCAGTTGGGAAAGGAGGAAATGATATCATCTCCGGGGCTCATAAGCGCTTTGGCCACCATATTGGAAGCCAGTGAGCTTGTAGAGCAGGAGCAAGCTCTCTGTTGCCTCTTAATTTTATGCAACGGGAATGAAATATGTAGCCAGATGGTACTTCAGGAAGGAGTAATACCTGCATTGGTGTCATTATCAGTGAATGGGACCACAAGAGGAAAAGAGAAAGCTCAGAAACTCTTGATGCTGTTCCGAGAACAGCGGGAGCGAGACCATTCACCTCCTAAGACACACCAGTTTCCGCCTGAAACTAGTGATATGCCTATGCCTCCTCCAGAAGCGAAACCGCTATGCAACTCTGTGTCTAGAAAAAAGATGGGTAGAGCTCTTAGCTTTCTGTGGAAAAGCAAGAGCTATTCCGTTTACCAGTGTTAA 2301 0.4298 MMDVAEVEETLFAASDAKLHGELYKALSATYYKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKGVLGKSLRRVEDIVPQSIACQIQEIVNEIESMEFALDPSEKQIGDDLIALLQQGRKFNNSNDSSELECFHQAANRLGITSSRAALTERRALKKHIERARAEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVLGSFEDGVAGGHYQAFDRQLSKLSSFNFRPTNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWLCDGHNTCPKTQQKLAHLSLTPNYCVKGLVTSWCEQNGVPIPDGPPESLDLNYWRLALSESESTNSRSVNSVNSCKLKGVKVVPLEESSVSQENGENGTESVSAQEEDTEQYLSFLKVLTEGNNWKRKCKVVDRLRLLLKDDEEARIFMGANGFVEALLQFLNSAVCEGNVMAQESGAMALFNLAVNNNRNKEIMLAAGILSLLEEMISNSSSYGCATALYLNLSCLEEAKRMIGSSQAVQFLIHLLLQPDIDVQCKQDSLHALYYLSTIPSNIPNLLQSGIINGLQSLLAGQGDCMWTEKCIAVLINLAASQLGKEEMISSPGLISALATILEASELVEQEQALCCLLILCNGNEICSQMVLQEGVIPALVSLSVNGTTRGKEKAQKLLMLFREQRERDHSPPKTHQFPPETSDMPMPPPEAKPLCNSVSRKKMGRALSFLWKSKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0350 766 SUPERFAMILY RING/U-box 276 356 - -
Bisa01g0350 766 MobiDBLite consensus disorder prediction 399 418 - -
Bisa01g0350 766 SUPERFAMILY ARM repeat 429 699 IPR016024 -
Bisa01g0350 766 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Bisa01g0350 766 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Bisa01g0350 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Bisa01g0350 766 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Bisa01g0350 766 MobiDBLite consensus disorder prediction 400 418 - -
Bisa01g0350 766 PANTHER U BOX DOMAIN-CONTAINING 37 711 - -
Bisa01g0350 766 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Bisa01g0350 766 Coils Coil 176 196 - -
Bisa01g0350 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Bisa01g0350 766 Gene3D - 420 712 IPR011989 -
Bisa01g0350 766 MobiDBLite consensus disorder prediction 708 734 - -
Bisa01g0350 766 SMART arm_5 540 582 IPR000225 GO:0005515
Bisa01g0350 766 SMART arm_5 625 666 IPR000225 GO:0005515
Bisa01g0350 766 SMART arm_5 455 499 IPR000225 GO:0005515
Bisa01g0350 766 SMART arm_5 501 539 IPR000225 GO:0005515
Bisa01g0350 766 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0350 Bisa-ChrBisa01 4718868 4722868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0350 2 765 U-box Gene Family AT1G24330 67.009 0.0 1033