Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0311 ATGGCAGCAACTCCACTCTCATTATCTGTTCTTCTTCTTCTTCCTTTCTTCGTTTGCTCTTCCCCAGTTCAAGATCCTGAAGCAGTAGTTCAAGAAGTTCAAGCGAGCCTTAACAGCTCCAGAAGGAATCTAGGGTATCTTTCATGCATAACAGGAAACCCCATAGACGACTGCTGGAGGTGCGACCCAAACTGGCACAAGCACCGAAAACGCCTCGCCAACTGCGCCATCGGGTTTGGGAAGCGTGCCATCGGGGGCCGAGACGGCAAGTACTACGTGGTCTCTGACCCCAACGACCATCCACTAAATCCTAAACCTGGAACCCTAAGACACGCAGTGATCCAAGACCAACCCTTATGGATCGTGTTCAAGCGAGACATGGCGATCAAGCTAAAGCAAGAACTCATCATGAACTCCTTCAAGACCATAGACGGTCGTGGAGCCCGAGTGCACATAGCAGGAGGACCCTGCATAACGATACAGTTCGCGACAAACATCATAATACATGGGATCAACATTCATGATTGTAAACGAGGAGGGAATGCGTATGTTAGGAACAGTCCGAGGCATTATGGGTGGAGGACTGAATCGGACGGTGATGGCATTTCCATCTTCGGAGGGAGCCATATTTGGGTGGACCATTGTTCTCTGTCGAACTGTCGTGATGGGCTGATCGATGCGGTTTATGGGTCAACGGCTATTACCATTTCGAATAATTATATGACGCATCATAATAAGGTCATGCTTTTGGGACACAGTGATAGTTTCAAGCAGGACAGGAATATGCAGGTGACTATTGCTTTCAACCATTTTGGAGAAGGACTTGTCCAGAGAATGCCAAGATGCAGACATGGATACTTCCATGTGGTGAACAATGACTACAATCATTGGCAGATGTATGCTATAGGTGGTAGTGCGTCCCCTACTATCAACAGCCAAGGCAACAGATTTCTTGCGCTCAATAACAGATTCTTCAAAGAGGTAACGAAGAGGGAGAATGCAGTGGAAAGTGTGTGGAAGAGATGGAATTGGAGGTCGAGTGGGGATTTGATGTTAAACGGTGCGTTTTTTAGGGCATCAGGGACTGCAGCTTCTTCAACCTATGCTCGGGCTTCCAGCTTGGCAGCTAAATCGTCGTCTTTCGTGGGGTCAATAACAGCATCAGCTGGTTCTCTTATCTGCAACAAGGGCTCACGCTGCTAA 1203 0.4805 MAATPLSLSVLLLLPFFVCSSPVQDPEAVVQEVQASLNSSRRNLGYLSCITGNPIDDCWRCDPNWHKHRKRLANCAIGFGKRAIGGRDGKYYVVSDPNDHPLNPKPGTLRHAVIQDQPLWIVFKRDMAIKLKQELIMNSFKTIDGRGARVHIAGGPCITIQFATNIIIHGINIHDCKRGGNAYVRNSPRHYGWRTESDGDGISIFGGSHIWVDHCSLSNCRDGLIDAVYGSTAITISNNYMTHHNKVMLLGHSDSFKQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYNHWQMYAIGGSASPTINSQGNRFLALNNRFFKEVTKRENAVESVWKRWNWRSSGDLMLNGAFFRASGTAASSTYARASSLAAKSSSFVGSITASAGSLICNKGSRC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0311 400 Pfam Pectate lyase 137 317 IPR002022 -
Bisa01g0311 400 Gene3D - 52 393 IPR012334 -
Bisa01g0311 400 PANTHER PECTATE LYASE 18-RELATED 24 398 IPR045032 GO:0030570
Bisa01g0311 400 SMART amb_all 126 323 IPR002022 -
Bisa01g0311 400 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Bisa01g0311 400 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Bisa01g0311 400 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Bisa01g0311 400 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Bisa01g0311 400 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Bisa01g0311 400 PRINTS Pollen allergen Amb family signature 342 366 IPR018082 -
Bisa01g0311 400 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Bisa01g0311 400 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Bisa01g0311 400 SUPERFAMILY Pectin lyase-like 53 390 IPR011050 -
Bisa01g0311 400 FunFam Pectate lyase 52 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0311 Bisa-ChrBisa01 4205823 4207699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0311 8 400 Polysaccharide Lyase AT4G24780 77.078 0.0 615