Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0301 ATGGATCCTGCGGGGGACGCAGGTGGTGTTGCGGGAACGGGCCCTATCCCCATGCGATTTGTGTGGCCATATGGGGGAAGAATTGTGTATCTTAGTGGTTCTTTCACACAGTGGTCTGAGCTTCTACTTATGTCGCCAGTTGAGGGTTGCCCAACTGTATTTCAAGTTATTCATAGCTTGAACCCTGGTTATCATCAGTACAAGTTTTTAGTTGATGGAGAATGGCGACATGATGTGCATCAACCTTTTGTACCTGGAGAATATGGGATAGTTAACACTATATTCTTGGTTACTGATCCTAACAACATGCCTGTTTTAAATCCAGACGTCACTTCTGGATCTAGCATGGATGTGGATAACGAGGCTTTTCGGCTTGTGTTAACAGATGGAACGTTGTCTGAGGTATTGCCAAGAATCTCAGATGCTTATGTACAGACCTCCCGTCAGCGTATTTCTGCATTCTTGTCTACGCACACAGCTTGCGAGTTACTTCCTGAGTCAGGCAAGGTTATTGCCATGGATTCTGATCTGCCAGTGAAACATGCATTTCATATATTGCATGAGCAGGGAATATCTATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAATTTGTTGGCATTCTTAGTGCTTCGGATTTTATTTTAATTTTACGAGAGCTGAAGAATCGTGGATCCAATCTGACAGAAGAAGAGCTTGAAACACATACCATATCTGCTTGGAAACAAGGAAAATTGTATCTAAACAGGCAACAAAATGAACATAGAACAACATCATCGAGACATTTTATCCATGCAGGGCCATATGATAATTTAAAAGATATTGCCATGAAGATCCTGCAAAATGAGGTTTCAACAGTTCCTATTATCCATTCAACGTCTGAAGATGGCTCATTTCCAGAGCTTTTACATCTTGCTTCACTTTCTGGAATACTTAATTGCATTTGCAGGTATTTTAGGCATTGCTCTAGTTTATTGCCTATACTCCAATTACCAATTTGTGCTATTCCGGTGGGAACATGGGTGCCCAAAATTGGGGAGTCAAGTCAGCGACCTTTAGCAATGTTGAGATCAAGTGCTTCTCTTACTTCAGCTCTAAATTTATTACTTGAAGCCCAAGTAAGTTCTATACCTATAGTGGATGATAATGACTCATTACTGGATATATATTGTCGGAGTGATATAATAGCTTTGGCAAAGGACAGAGCTTATACACATATCAATTTTGATGAAATGACTGTTCATCAGGCATTGCAGTTGGACCAGGATTTGTATCATTCTTATGATCTGAGAAGTCAACGATGTCAGATGTGTCTGCGATCTGATTCTCTTCATAAAGTGATGGAACGGTTGACAGATCCTGATATCAGGCGGCTAGTTGTCGTGGAAGCTGGCAGCAAGCGTATAGAAGGCATTGTTTCACTGAGTGACATATTCAAGTTCTTCCTTGGGTAG 1452 0.4153 MDPAGDAGGVAGTGPIPMRFVWPYGGRIVYLSGSFTQWSELLLMSPVEGCPTVFQVIHSLNPGYHQYKFLVDGEWRHDVHQPFVPGEYGIVNTIFLVTDPNNMPVLNPDVTSGSSMDVDNEAFRLVLTDGTLSEVLPRISDAYVQTSRQRISAFLSTHTACELLPESGKVIAMDSDLPVKHAFHILHEQGISMAPLWDFCKGQFVGILSASDFILILRELKNRGSNLTEEELETHTISAWKQGKLYLNRQQNEHRTTSSRHFIHAGPYDNLKDIAMKILQNEVSTVPIIHSTSEDGSFPELLHLASLSGILNCICRYFRHCSSLLPILQLPICAIPVGTWVPKIGESSQRPLAMLRSSASLTSALNLLLEAQVSSIPIVDDNDSLLDIYCRSDIIALAKDRAYTHINFDEMTVHQALQLDQDLYHSYDLRSQRCQMCLRSDSLHKVMERLTDPDIRRLVVVEAGSKRIEGIVSLSDIFKFFLG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0301 483 ProSiteProfiles CBS domain profile. 348 404 IPR000644 -
Bisa01g0301 483 SUPERFAMILY CBS-domain pair 349 482 IPR046342 -
Bisa01g0301 483 SUPERFAMILY E set domains 16 98 IPR014756 -
Bisa01g0301 483 Pfam Glycogen recognition site of AMP-activated protein kinase 16 100 IPR032640 -
Bisa01g0301 483 Gene3D - 331 483 IPR046342 -
Bisa01g0301 483 SMART cbs_1 169 218 IPR000644 -
Bisa01g0301 483 SMART cbs_1 433 482 IPR000644 -
Bisa01g0301 483 SMART cbs_1 351 399 IPR000644 -
Bisa01g0301 483 Gene3D Immunoglobulins 16 109 IPR013783 -
Bisa01g0301 483 SUPERFAMILY CBS-domain pair 149 320 IPR046342 -
Bisa01g0301 483 ProSiteProfiles CBS domain profile. 429 483 IPR000644 -
Bisa01g0301 483 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 146 481 - -
Bisa01g0301 483 ProSiteProfiles CBS domain profile. 163 225 IPR000644 -
Bisa01g0301 483 FunFam Sucrose nonfermenting 4-like protein 14 98 - -
Bisa01g0301 483 Pfam CBS domain 435 482 IPR000644 -
Bisa01g0301 483 Pfam CBS domain 350 397 IPR000644 -
Bisa01g0301 483 CDD E_set_AMPKbeta_like_N 17 97 - -
Bisa01g0301 483 Gene3D - 140 324 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0301 Bisa-ChrBisa01 4058027 4072158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0301 6 103 Protein tyrosine phosphatase (PTP) family AT3G01510 33.000 8.78e-06 46.2