Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0299 ATGGAGCGTTACGGCCGGACCAGCGAAGGGTCGCAGTCTGATCCGTCACCGGAATGGACCGGGACGGGAGGCGAAACGGGGCTTGAAGCGACAGTGTGGCAATTGGGATTGGGCGGTGGGGAATCGTATCCCCAAAGGCCCGATGAGGCTGATTGTATCTACTATTTGAGGACTGGTATTTGTGGGTATGGCTCGCGGTGTCGGTTCAACCATCCCCGTGACCGTGGCGCGGTTATTGGAGCTGCTAGGGCAGGAGGGGAATATCCGGAACGAGCAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAGGATCATGCAAATTTGGTCCGTCCTGTAAGTACCACCACCCTAGGCAGGGAGGAGGCACTGTTACACCTGTGTCACTAAATTATTATGGATATCCATTGCGACCGGGTGAGAAAGAATGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACATGTAAATTTCATCATCCACAGCCTGCTGGCATCCAAATTCCAGCACAATCACCAGTTCCCCCAGTTTCACATCTACCTGTACCAGTACCTTCATTATATCCAACAGCACAGCCACCATCTGGTCCTTCATCACCACAATATGGTGTAATGGTTGCATCTGCTAGGCCACCTCTGCTACCTGGGTCATTAGTCCCCAGCCATTATGGACATATGGTTTTGTCCCCTGCCATGGTTCCTTTTCCAGGTTGGAGTCCTTATCAGCCTCCCGCAAGCCCTCTAGTTCCTTCAAGTACTCCGTCTAATGTTGGTTCAACCCAGCTCTATGGGATAAGCCAACTACCTTCATCGGCACCTTCCTATACTGGACAATATCAACCTTCAGGTTCCTCAGTCGGTCCTTCAGGCAGTGGTCAGAAGGAACACTCATATCCAGAAAGACCTGGTCAACCAGAATGTCAGTATTATCTGAAAACTGGGGAGTGTAAATTTGGTCCATCATGTAGATATCATCATCCACCTGAATTGACTGCACCAAAAACGAATGTGGTCCTTAGTCCTGTGGGCCTTCCTTTGCGCCCGGGGGCACCGCCTTGCACTCATTATGCACAGCGTGGAATTTGTAAATTTGGCCCAGCATGCAAATTTGATCATCCTATGGGAGCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGATATGCCGGTTGCACCTTATCCTGTGGGTTCATCTGTTGGAACTCTTGCCCCATCATCTTCATCATCGGAGTTGCGGCCTGAACTTACCTCAGGATCCATCAAGGAGTCTGCATCATCCAGAATGTCATCATCCATGAGCACATCAACGGGATCCGTTGGCTTGACCTTGTCATCTCCTGGATCCATTTCTCAATCAAGTGCTCAACAATCTGCTCAGAGTTCCAGTCCTTCAGCAATTACCAGTAGCACCACAAGCAGCACAGTCTCTCACACCTCAAGTTAA 1452 0.5 MERYGRTSEGSQSDPSPEWTGTGGETGLEATVWQLGLGGGESYPQRPDEADCIYYLRTGICGYGSRCRFNHPRDRGAVIGAARAGGEYPERAGQPVCQYYMRTGSCKFGPSCKYHHPRQGGGTVTPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPQPAGIQIPAQSPVPPVSHLPVPVPSLYPTAQPPSGPSSPQYGVMVASARPPLLPGSLVPSHYGHMVLSPAMVPFPGWSPYQPPASPLVPSSTPSNVGSTQLYGISQLPSSAPSYTGQYQPSGSSVGPSGSGQKEHSYPERPGQPECQYYLKTGECKFGPSCRYHHPPELTAPKTNVVLSPVGLPLRPGAPPCTHYAQRGICKFGPACKFDHPMGALSYSPSASSLADMPVAPYPVGSSVGTLAPSSSSSELRPELTSGSIKESASSRMSSSMSTSTGSVGLTLSSPGSISQSSAQQSAQSSSPSAITSSTTSSTVSHTSS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0299 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Bisa01g0299 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 330 IPR000571 GO:0046872
Bisa01g0299 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Bisa01g0299 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Bisa01g0299 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 376 IPR000571 GO:0046872
Bisa01g0299 483 SUPERFAMILY CCCH zinc finger 307 330 IPR036855 GO:0046872
Bisa01g0299 483 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Bisa01g0299 483 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Bisa01g0299 483 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Bisa01g0299 483 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Bisa01g0299 483 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Bisa01g0299 483 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Bisa01g0299 483 Gene3D - 292 378 - -
Bisa01g0299 483 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872
Bisa01g0299 483 SUPERFAMILY CCCH zinc finger 353 379 IPR036855 GO:0046872
Bisa01g0299 483 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Bisa01g0299 483 MobiDBLite consensus disorder prediction 274 306 - -
Bisa01g0299 483 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Bisa01g0299 483 MobiDBLite consensus disorder prediction 274 294 - -
Bisa01g0299 483 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Bisa01g0299 483 Gene3D - 124 170 - -
Bisa01g0299 483 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Bisa01g0299 483 MobiDBLite consensus disorder prediction 402 483 - -
Bisa01g0299 483 Gene3D - 44 123 - -
Bisa01g0299 483 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Bisa01g0299 483 MobiDBLite consensus disorder prediction 401 483 - -
Bisa01g0299 483 FunFam CCCH type zinc finger protein 301 386 - -
Bisa01g0299 483 PANTHER PROTEIN PHOSPHATASE RELATED 38 412 - -
Bisa01g0299 483 MobiDBLite consensus disorder prediction 1 25 - -
Bisa01g0299 483 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0299 Bisa-ChrBisa01 4027750 4033949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0299 1 424 C2H2 Transcription Factor Family AT5G18550 59.589 1.37e-160 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa01g0299 zf-CCCH 1.5e-08 CL0537