Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0289 ATGGCTCCTGTTGAGCTAAAAGAACTCAAAGAACAATTGGAAGATTTGTTAAACAAAGGGTTCATTCGCCCAAGTTTTTCACCTTGGGGTGCTCCTGTTCTTTTTGTGAAAAAGAAAGATGGTTCTATGAGACTATGTATAGATTATCGTCAGCTGAATAAAGTCACAGTGAAAAATAAGTATCCTTTACCAAGGATAGATGATTTGTTTGATCAGCTTAAAGGAGCAAAATACTTCTCAAAGATTGATCTAAGATATGGATATCATCAGTTACGAATTAAGAATGATGATATACCTAAGACAGCTTTTCGTACACGGTATGGACATTATGAGTTTCTTGTGATGTCTTTTGGGTTGATAAATGCACCAGCAGTATTTATGGATTTAATGAACAGAGTGTTCAAATCATTTCTTGATAAGTTTGTAATTGTATTTATTGATGATATTTTGGTATATTCAAAGAGTCATGAAGAACATACTGAACATTTGAGAATAGTGCTTCAGACTTTGAGAGAGCATCAGTTGTACGCAAAGCTCTCAAAATGTGAATTCTGGATGAGTCATGAAACATTTTTTGGACATTTTATTTCCCAAGAAGGTATTCATGTAGATCCAAGTAAAATTGAAGCAATAAAACAATGGCCTAGACCAACAACTGTGTCAGAAGTACGTAGTTTTCTTGGCTTAGCAGGGTATTACCGTCGCTTTGTCAAAGATTTCTCTAAGACGGCTCTCCCATTAAATAAGTTAACCCGAAAGAATGTTAAATACATTTGGGATGATTCATGTGAACAAAGTTTCACCCAACTGAAAGAGTGTTTAACTTCTGCACCAGTCTTAATCCTACCATCAGGACCAGGGGGTTACTCTGTATTCTGTGATGCCTCAAAGATAGGCTTAGGGTGTGTGTTGATGCAACATGGTAAAGCAAATGTAGTGGCCGATGCTCTAAGTCGAAAGTCTATGGGAAGTTTAGCTCACATTGCCACTATAAGGAGGTCTCTAATACATGAACTACAAGAATTAGAAGCTGATGGAGTATTCTTCGAGATCACTGAGTCAGGTACATTTCTGGCTCATTTAACAGTTAGATCATCCCTTGTTAAAAAGGTAAAAGCAACTTTAGAAAATGACATTGATATGGTCAAAATCAGAGATAAGGCAAGGCAAGGTCTAGCACCAAGTTTCTTGGTAGATGAAGAAGGAGTCTTATGGTTTAATGGGAGACTTTGTGTCCCCAACATTGAATCTTTGAAACATGAAATTTTAATGGAAGCTCATGGTTCGCCCTACGTTGTACATCCTGGTGCTGTGAAAATGTATCAGGACTTGAAACAAGTTTACTGGTGGGAGGGCATGAAGCGAGATGTGACTGACTTTGTAGCTCGATGTTTGACTTGTCAGAAAGTTAAAGCTGAACATCGACGACCACCTGGTTTGATGCAAAAATTAGATATTCCCGAGTGGAAGTGGGAAAGGATCACTATGGATTTTGTAGTAGGTTTACCTCGGTCAACAAAAGGAAATGACTCAATATGGGTCATAGTGGATCGACTTACTAAGTCAGCACATTTTCTTCCTGTTCATACCACTTTCAGTGTAGCAAAACTTGCTCGACTTTATGTTAAAGAAATAGTGAAACTTCATGGTGTACCAATATCCATTATATCAGACCGAGGACCTCAGTTTACTTCTCGGTTCTGGAAAGTCTTTCAAGAGGCTTTGGGTACCAAAGTGAATCTTAACACAGCATTCCATCCTCAGACTGATGGACAGTCCGAAAGGACAATTCAGATTTTAGAGGATATGCTAAGAGCTTGTGTGATGGATTTCAGTGGAAGTTGGGAAGATCATTTGTCTCTTATTGAATTTGCTTATAATAACAGTTACCAAGCCAGTATCCAGATGGCACCTTTTGAGGCTTTATATGGGAGACGGTGTCGATCTCCTATAGGTTGGTTTGAACTTGGTGAAACCAAAATATTTGGACTTGAGATGATTCAGGAAGATATAAATAAAGTTAAACTTATCAGAGAGAGGTTGTTAACTGCTCAGAGTAGACAGAAATCTTATGCGGACAACCGACGACGTGACCTTGAATTTGCAATAGGTGATATGGTTTTCTTACGAATCTCACCTATGAAGGGAGTAATGAGATTCGGGAAGAAAGGCAAGCTTAGTCCGAGGTATGTTGGCCCATATGAGGTTGTTGACAGAGTGGGTAATGTGGCATATCGCCTAGACCTACCTTCCTACCTAGAGGGAGTTCATCCAATATTTCATGTGTCCATGCTACGGAAGTATCTTCCTGATCCTTCTCATGTCATTCAACCCCAAGAAGTTCATTTTGATGAAACTCTCACCTACGAAGAGGTACCAGTAGCTATCCTTGATAGAAAAGTCAAGAAATTACGTACTAAAGGAATTCCTACTGTCAAGATCTGTGACAGATCAATGTCAGAAGGATCTTCTAATAATAATGAACATATGGGTCCAAGGAGGGCCATAAGTCCACCAGTACATGTGCAAGATGATCCTAACCGTGGTGATAGTTTACATGCTCAAAGTACTGAGGGCGCAACTAGTGAGCAAGCAAGGAGAGTCGAACCTGATGCTCACGTTGGCAATGCAACTATTGCACATGTGATTAATTTGATGAATGAACGATTTGACCGATTTGAGGCTGAAATGAGAGGTCGAGCTGCACAAGCTAACCTGCCAGTGGATCCTCCTATTGTTGAAGCTGAAATTGTACCACCAGCTCAGTTAGCTGGAGGAGATAACGTAAGGGAGGTAAGAATGTCTGAATTCCAGAAAATGAGGCCTCCTACTTTTTCAGGGGAAGATCCCAAAGAGGACCCACAATGTTTCCTTGAAGATTGTGAAGCAATCTGTGATGCTATAGGGTGTTCTCCTACTCAAAAGGTAGAATTCACTTCCTTTCAGTTAAAGGGTAGGGCTGGTAAATGGTGGAGGAACTGGAAGAAAGCTAGAATTCAAGGCGCACCACCAGTTATGTGGACAGAATTTTACAGATTGGTTATGGATGAATTCCTTCCGTCAAGTGAACGATCATCTAGGGCCAGGGATTTTCTGTATCTACGGAAGAAAATAGAAAAGTTTGTGCAAGGGCTTCGTGATGCCTTATATGATCAAGCCCAAAATCTCAGAAGCCTAGCGTCGGAGCAAGAGAAACTTAAGGAGGGAAGAAGAGAAGTTGAAGGTGTGAGTTTAGAAGTGAAATGGAAGGGCCTATTTATAGCAAAAGTTAAGGGGTTTTGTGAGGGTGGCTTTCTTGTGTTTGGATTTGATATGGGTGGGTGTTTTCCTTGCTTTGGATCATCCAACAAGGAGGCCAAAGGGTTAAAGGAAGTAGTAGTCAAGAAGGATTCGCTCAAAGAAGGTTCAATTGCTCAGTCTTACCACACAAACAGGGTTAGCTCAGATAAATCGAAATCGCAGAGTGGCTCTGATCCTAAGAAGGAACCCCCAGTTCCAAAGGATGGACCAACAGCCCACATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAATGTTTATTAGGCGAAGGAGGTTTTGGACGTGTTTACAAAGGTCGTCTCGAGGGCACCGGACAAGTAGTTGCTGTAAAACAGCTTGACCGCAATGGCCTTCAAGGAAATCGAGAATTTTTGGTGGAGGTTCTCATGCTTAGCCTCTTGCATCACCCAAATCTTGTTAACTTAATTGGTTATTGTGCTGATGGTGATCAACGGCTTCTTGTTTATGAGTTTATGCCATTGGGCTCTTTGGAGGATCATTTACATGATCTTCCTCCTGATAAGGAGCCCCTGGACTGGAACACAAGGATGAAAATAGCAGCTGGTGCTGCTAAGGGATTAGAATACTTGCATGACAAAGCAAACCCCCCAGTAATTTATAGAGACCTGAAGTCATCCAACATCCTCCTGGATGAGGGTTATCATCCCAAGCTATCAGATTTTGGGCTTGCGAAACTTGGACCTGTTGGTGATAAGACTCACGTATCCACACGAGTAATGGGGACATATGGCTATTGTGCCCCAGAGTATGCTATGACAGGCCAACTAACTCTGAAATCTGACGTATATAGTTTTGGAGTTGTTTTCCTGGAACTCATTACTGGGCGCAAGGCTATTGATAATACAAGAGCACATGGAGAGCACAATCTCGTTGCCTGGGCACGACCTCTTTTTAAAGATCGTAGGAAGTTCCCAAAAATGGCTGATCCTCTACTTCAAGGCCGTTATCCAATACGAGGACTCTACCAAGCGCTTGCAGTTGCAGCTATGTGTTTGCAAGAACAAGCTGCTACAAGGCCTCTTATTGGGGATGTTGTGACTGCTCTAACATACCTGGCCACACAGACGTATGACCCAAATACAGCCAGTCAGAATAATAGAGTTGGTTCATCAACCCCAAGGGGTAGGGATGATCGAAGGAGCATGGCAGATGGCCTTATGGATAGCCCTGATCGTGGACGGAGTGGCTCCCCTTCGACTCATAAGAACTCACCTGATTTTAGGAAGAGAGACGGTAGGAATCCAAGTGTGGTTACAGAGTTAGGCAGGATTGAAACTGGGTCAGGGAGAAAGTGGGGATTGGATGATGTAGAAAGGCAGGAATCTCAGAGAGGCAGCCCTGTAAATACTGGGAGAGCTAGGGAAACTCCAAGGAACCGCGACCTGGACAGGGAACGTGCAGTTGCAGAAGCAAAAGTATGGGGTGAAAATTGGAGAGAAAAGAAGCGGGCAAATGCAGCGGGTAACTTTGATCCTACCAATGAGTGA 4836 0.4204 MAPVELKELKEQLEDLLNKGFIRPSFSPWGAPVLFVKKKDGSMRLCIDYRQLNKVTVKNKYPLPRIDDLFDQLKGAKYFSKIDLRYGYHQLRIKNDDIPKTAFRTRYGHYEFLVMSFGLINAPAVFMDLMNRVFKSFLDKFVIVFIDDILVYSKSHEEHTEHLRIVLQTLREHQLYAKLSKCEFWMSHETFFGHFISQEGIHVDPSKIEAIKQWPRPTTVSEVRSFLGLAGYYRRFVKDFSKTALPLNKLTRKNVKYIWDDSCEQSFTQLKECLTSAPVLILPSGPGGYSVFCDASKIGLGCVLMQHGKANVVADALSRKSMGSLAHIATIRRSLIHELQELEADGVFFEITESGTFLAHLTVRSSLVKKVKATLENDIDMVKIRDKARQGLAPSFLVDEEGVLWFNGRLCVPNIESLKHEILMEAHGSPYVVHPGAVKMYQDLKQVYWWEGMKRDVTDFVARCLTCQKVKAEHRRPPGLMQKLDIPEWKWERITMDFVVGLPRSTKGNDSIWVIVDRLTKSAHFLPVHTTFSVAKLARLYVKEIVKLHGVPISIISDRGPQFTSRFWKVFQEALGTKVNLNTAFHPQTDGQSERTIQILEDMLRACVMDFSGSWEDHLSLIEFAYNNSYQASIQMAPFEALYGRRCRSPIGWFELGETKIFGLEMIQEDINKVKLIRERLLTAQSRQKSYADNRRRDLEFAIGDMVFLRISPMKGVMRFGKKGKLSPRYVGPYEVVDRVGNVAYRLDLPSYLEGVHPIFHVSMLRKYLPDPSHVIQPQEVHFDETLTYEEVPVAILDRKVKKLRTKGIPTVKICDRSMSEGSSNNNEHMGPRRAISPPVHVQDDPNRGDSLHAQSTEGATSEQARRVEPDAHVGNATIAHVINLMNERFDRFEAEMRGRAAQANLPVDPPIVEAEIVPPAQLAGGDNVREVRMSEFQKMRPPTFSGEDPKEDPQCFLEDCEAICDAIGCSPTQKVEFTSFQLKGRAGKWWRNWKKARIQGAPPVMWTEFYRLVMDEFLPSSERSSRARDFLYLRKKIEKFVQGLRDALYDQAQNLRSLASEQEKLKEGRREVEGVSLEVKWKGLFIAKVKGFCEGGFLVFGFDMGGCFPCFGSSNKEAKGLKEVVVKKDSLKEGSIAQSYHTNRVSSDKSKSQSGSDPKKEPPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLEGTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPIRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLATQTYDPNTASQNNRVGSSTPRGRDDRRSMADGLMDSPDRGRSGSPSTHKNSPDFRKRDGRNPSVVTELGRIETGSGRKWGLDDVERQESQRGSPVNTGRARETPRNRDLDRERAVAEAKVWGENWREKKRANAAGNFDPTNE 1611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0289 1611 SUPERFAMILY Ribonuclease H-like 486 642 IPR012337 -
Bisa01g0289 1611 Gene3D - 385 471 - -
Bisa01g0289 1611 SMART serkin_6 1191 1468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g0289 1611 FunFam Serine/threonine-protein kinase PBS1 1268 1483 - -
Bisa01g0289 1611 Pfam Protein kinase domain 1196 1404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g0289 1611 Gene3D - 61 196 IPR043128 -
Bisa01g0289 1611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1314 1326 IPR008271 GO:0004672|GO:0006468
Bisa01g0289 1611 Gene3D Phosphorylase Kinase; domain 1 1175 1267 - -
Bisa01g0289 1611 ProSitePatterns Protein kinases ATP-binding region signature. 1197 1220 IPR017441 GO:0005524
Bisa01g0289 1611 ProSiteProfiles Integrase catalytic domain profile. 483 646 IPR001584 GO:0015074
Bisa01g0289 1611 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 17 196 IPR000477 -
Bisa01g0289 1611 ProSiteProfiles Protein kinase domain profile. 1191 1468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g0289 1611 FunFam Transposon Tf2-6 polyprotein-like Protein 206 295 - -
Bisa01g0289 1611 MobiDBLite consensus disorder prediction 1142 1171 - -
Bisa01g0289 1611 SUPERFAMILY Protein kinase-like (PK-like) 1173 1465 IPR011009 -
Bisa01g0289 1611 Gene3D Transferase(Phosphotransferase) domain 1 1268 1488 - -
Bisa01g0289 1611 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 36 192 IPR000477 -
Bisa01g0289 1611 PANTHER OS07G0668900 PROTEIN 1108 1478 - -
Bisa01g0289 1611 Pfam Integrase zinc binding domain 416 472 IPR041588 -
Bisa01g0289 1611 MobiDBLite consensus disorder prediction 1475 1582 - -
Bisa01g0289 1611 CDD RT_LTR 20 196 - -
Bisa01g0289 1611 MobiDBLite consensus disorder prediction 817 831 - -
Bisa01g0289 1611 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 1 121 - -
Bisa01g0289 1611 MobiDBLite consensus disorder prediction 849 863 - -
Bisa01g0289 1611 CDD STKc_IRAK 1197 1466 - -
Bisa01g0289 1611 SUPERFAMILY DNA/RNA polymerases 2 308 IPR043502 -
Bisa01g0289 1611 Coils Coil 1059 1079 - -
Bisa01g0289 1611 MobiDBLite consensus disorder prediction 1488 1503 - -
Bisa01g0289 1611 MobiDBLite consensus disorder prediction 815 873 - -
Bisa01g0289 1611 Pfam Retrotransposon gag protein 978 1068 IPR005162 -
Bisa01g0289 1611 Pfam RNase H-like domain found in reverse transcriptase 259 331 IPR041577 -
Bisa01g0289 1611 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 89 121 - -
Bisa01g0289 1611 Gene3D - 206 298 IPR043128 -
Bisa01g0289 1611 FunFam Serine/threonine-protein kinase PBS1 1164 1267 - -
Bisa01g0289 1611 Gene3D - 480 685 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0289 Bisa-ChrBisa01 3864223 3880694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0289 1171 1470 Glycoside Hydrolase AT3G07070 76.000 2.92e-157 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Bisa01g0289 Pkinase 1.1e-44 CL0016