Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0287 ATGGCCAGGCCTTCGAAGCCCCAGGTGTCCTCCGATGAAGCCATGTCTAACGCCTCCAATTCCTCGGAGGACGAGCACGTCAACGAGCAGATCAACGACGAAGAGGACGAAGAAGAGTTGGAGGCCGTCGCTCGCTCCGCTAGCTCGGACGACGATGAAGCCGCCGACGATGACGTTCCAGATTCCGATGAGGATGCTGCCGCTGGAGACGCCGACGAGGAGGAACAGGATGGTGGAACTGTTAATCCAGAAATTAGCAAGCGTGAAAAGGCCAGATTGAAAGAAATGCAAAGACTGAAGAAACAAAAGATTCAGGAGATATTGGATGAGCAAAATGCTGCCATTGATGCAGATATGAACAACAAAGGAAAGGGGCGCTTGAAGTATCTCCTACAGCAAACTGAGTTGTTTGCTCATTTTGCAAAAGGTGATCAAAGTTCATCTCAGAAGAAGTCAAAAGGAAGGGGTCGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGATGGTTTGGCAGGAAATACACGGTTGGTGACACAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCCGGGCTAAATTGGCTCATAAGATTGTATGAAAATGGTATCAATGGAATTCTGGCAGATGAAATGGGGCTTGGTAAAACATTGCAAACTATCTCCTTATTGGGTTATTTGCATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGTCCTATTTTGCGTGCAGTAAAGTTTCTTGGCAATCCTGATGAAAGGAGATATATTAGGGAGGAACTATTGGTTGCTGGAAAGTTTGATGTGTGTGTTACAAGTTTTGAGATGGCAATCAAGGAGAAGTCTGCCTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCCCATCGGATCAAGAATGAGAATTCTTTACTTTCTAAAACAATGAGGCTATACAATACAAACTACCGCCTTTTAATTACTGGCACACCACTGCAGAACAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTTCCAGAAATTTTCAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAGCAAGAGGTCGTTCAACAACTGCACAAGGTCCTCCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAAAAGGGTTTGCCACCCAAAAAGGAAACCATTCTGAAAGTAGGAATGTCACAAATGCAGAAACAGTATTATAGGGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAACGGCTCCTGAATATAGCAATGCAACTGCGTAAATGTTGTAATCACCCGTATCTTTTCCAAGGTGCTGAACCTGGTCCTCCATATACAACTGGAGATCATCTCATTACAAATGCCGGTAAGATGGTTCTTTTGGATAAGTTACTTCCTAAATTAAAAGAGCGTGACTCTAGGGTGCTTATATTTTCACAGATGACCAGGTTGCTAGATATACTTGAAGATTACTTGATGTATCGTGGATATCAGTATTGTCGTATTGATGGTAATACTGGTGGAGATGACCGTGATGCTTCCATTGATGCTTTCAATAAACCTGGAAGTGAGAAATTTGTATTCTTGTTATCAACTCGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCCGATGTTGTCATTCTGTATGACAGTGATTGGAACCCACAAGTTGACTTGCAGGCTCAGGACCGGGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTCTTTCGTTTTTGCACCGAGTATACCATTGAGGAAAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCACTGGTGATTCAGCAAGGACGATTGGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTCAGATTTGGTGCTGAAATGGTTTTCAGTTCGAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAACTTGATGCCAAGATGAAAAAATTTACTGAAGATGCGATCAAATTTAAGATGGATGAAACTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAGAACAAATTTGATTTCAAAAAAATTGTTAGTGAAAACTGGATTGAGCCACCAAAAAGAGAACGAAAGCGCAATTACTCAGAGTCTGAATATTTCAAGCAAACAATGCGCCAAAGTGGTCCTAGTAAACCCAAAGAGCCCCGTATTCCAAGGATGCCTCAGCTGCATGATTTCCAGTTCTTCAACACACAAAGGTTGAGTGAGTTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAGTTAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCTTTGACTGCTGAAGAGCTAGAAGAAAAGGAACGCCTGCTAGAGGAGGGATTTTCATCATGGAGCCGAAGGGACTTTAACACTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGTAAAACAGAGGAAGAAGTTGAAAGATATTCCAAGGTATTCAAAGAGAGATACAAGGAATTGAATGATTATGATAGAATTATAAAAAATATTGAGAGAGGGGAGGCTAGAATATCTCGTAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGCTAGAGTTGAAGATACAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGATTTGCATGGTTCACAAACTGGGCTATGGGAATTGGGATGAGTTGAAGGCAGCATTTCGTACATCACCCTTGTTTCGTTTTGATTGGTTTGTTAAGTCCCGCACAACACAGGAACTTGCAAGGAGGTGTGACACCCTTATTCGGTTGGTAGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCCAAGAACAACATGACCCCTTCAAAGCGTGCCTTGGCAAGACAGACAGAGTCTCTGTCTTCTCTGAAGAAGCGCAAGCAGTTAACTATGGATGACTATGCTAGCACGGGGAAGAGGAGAAAATGA 3219 0.4203 MARPSKPQVSSDEAMSNASNSSEDEHVNEQINDEEDEEELEAVARSASSDDDEAADDDVPDSDEDAAAGDADEEEQDGGTVNPEISKREKARLKEMQRLKKQKIQEILDEQNAAIDADMNNKGKGRLKYLLQQTELFAHFAKGDQSSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLAGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPDERRYIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQSGPSKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYSKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNNMTPSKRALARQTESLSSLKKRKQLTMDDYASTGKRRK 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0287 1072 SUPERFAMILY Homeodomain-like 902 1024 IPR009057 -
Bisa01g0287 1072 MobiDBLite consensus disorder prediction 749 777 - -
Bisa01g0287 1072 SUPERFAMILY Homeodomain-like 850 900 IPR009057 -
Bisa01g0287 1072 Pfam Helicase conserved C-terminal domain 499 611 IPR001650 -
Bisa01g0287 1072 Gene3D - 417 709 IPR027417 -
Bisa01g0287 1072 MobiDBLite consensus disorder prediction 142 176 - -
Bisa01g0287 1072 MobiDBLite consensus disorder prediction 1021 1035 - -
Bisa01g0287 1072 Gene3D ISWI, HAND domain 748 846 IPR036306 GO:0003677|GO:0006338|GO:0031491
Bisa01g0287 1072 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 652 IPR001650 -
Bisa01g0287 1072 SMART helicmild6 527 611 IPR001650 -
Bisa01g0287 1072 MobiDBLite consensus disorder prediction 1 97 - -
Bisa01g0287 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 694 IPR027417 -
Bisa01g0287 1072 Coils Coil 86 113 - -
Bisa01g0287 1072 FunFam ISWI chromatin-remodeling complex ATPase CHR11 417 709 - -
Bisa01g0287 1072 ProSiteProfiles SANT domain profile. 846 898 IPR017884 -
Bisa01g0287 1072 CDD SANT 850 889 IPR001005 -
Bisa01g0287 1072 Pfam SLIDE 904 1014 IPR015195 GO:0003677|GO:0005634|GO:0006338
Bisa01g0287 1072 Pfam HAND 760 842 IPR015194 GO:0003677|GO:0006338|GO:0031491
Bisa01g0287 1072 CDD DEXHc_SMARCA1_SMARCA5 193 413 IPR044754 GO:0005524
Bisa01g0287 1072 Pfam SNF2-related domain 209 476 IPR000330 GO:0005524|GO:0140658
Bisa01g0287 1072 SMART ultradead3 192 384 IPR014001 -
Bisa01g0287 1072 FunFam ISWI chromatin-remodeling complex ATPase CHR11 935 1039 - -
Bisa01g0287 1072 FunFam Chromatin-remodeling complex ATPase 197 412 - -
Bisa01g0287 1072 Gene3D - 935 1038 - -
Bisa01g0287 1072 MobiDBLite consensus disorder prediction 51 79 - -
Bisa01g0287 1072 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 759 849 IPR036306 GO:0003677|GO:0006338|GO:0031491
Bisa01g0287 1072 Coils Coil 1004 1035 - -
Bisa01g0287 1072 Gene3D iswi atpase 902 934 - -
Bisa01g0287 1072 MobiDBLite consensus disorder prediction 9 25 - -
Bisa01g0287 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 411 IPR027417 -
Bisa01g0287 1072 SMART sant 847 896 IPR001005 -
Bisa01g0287 1072 SMART sant 949 1010 IPR001005 -
Bisa01g0287 1072 MobiDBLite consensus disorder prediction 1021 1072 - -
Bisa01g0287 1072 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 87 1056 - -
Bisa01g0287 1072 MobiDBLite consensus disorder prediction 1050 1072 - -
Bisa01g0287 1072 CDD SF2_C_SNF 497 622 - -
Bisa01g0287 1072 MobiDBLite consensus disorder prediction 80 97 - -
Bisa01g0287 1072 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 847 901 - -
Bisa01g0287 1072 Gene3D - 847 901 - -
Bisa01g0287 1072 FunFam ISWI chromatin-remodeling complex ATPase CHR11 748 846 - -
Bisa01g0287 1072 Gene3D - 197 412 IPR038718 -
Bisa01g0287 1072 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 373 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0287 Bisa-ChrBisa01 3854505 3862644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0287 217 638 RAD5 or RAD16-like Gene Family AT1G02670 27.129 4.75e-41 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa01g0287 SNF2_N 2.2e-71 CL0023