Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0285 ATGTTACGGCGTCAATCCTTTTCTGTGCGGCTGAGGATCGATACAACACAAACCAACAAATCTTCCCAAATCAGGAAACCCCTCCCCTCGCCTTCCCCTCTCTTGCCAGCGAGAGAGACTCACCCCAAAGAAAGAGAGAGCGTTCTGCATCTGCGACGCCCCTCTCTTCCAAAATTCATGGAAGGCTCTGCTAATGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAACATTACAGGAGAAGATGCTCGATTCGAGCTCCTTGCTGCAATGAGATTTACTCCTGCCGTCATTGTCATAACGAGGCGACGAGCACATTGACCAATGTCTTTGATCGCCACGAACTCGTACGCCATAGTGTTGAACAAGTTGTTTGTGCAGTTTGTGACACAGAGCAGCCGGTTGCTCAAGTTTGCACTAACTGTGGCGTCAGAATGGGAGAATATTTCTGCGATATCTGCAAATTCTTTGACGATGATGTGGGGAAACAACAGTTTCATTGTGATGATTGTGGGATCTGCAGAGTTGGTGGTCGCGAGAATTATTATCATTGCCAGAAGTGCAGGTCTTGCTATTCAATTGGTCTGCGCGATAATCATTCATGTGTGGAGGACTCCATGAAGCATCACTGTCCCATATGTTATGAGTACCTTTTTGACTCATTGAAAGACACTATTGTTATGAAATGCGGTCACACAATGCATTGTGAGTGTTACCAAGAAATGATAAGGCGTGACAAATTCTGTTGCCCCATATGTTTCAAGTCAGTGATTGACATGTCCAAGACGTGGAAGAGAATTGATGAAGAGATTGAAGCGACAATCATGCCTGAAGATTATCGGAACAGGAAGGTTTGGATACTCTGTAATGACTGTAATGACACGACTGAAGTGTACTACCACGTTATCGGGCAAAAATGCGGCCACTGCAGTTCATATAACACTCGTTCAATTGCTCCTCCTGTTTTTCCACGTTCTTGA 984 0.4522 MLRRQSFSVRLRIDTTQTNKSSQIRKPLPSPSPLLPARETHPKERESVLHLRRPSLPKFMEGSANERLDFGKMGYGCKHYRRRCSIRAPCCNEIYSCRHCHNEATSTLTNVFDRHELVRHSVEQVVCAVCDTEQPVAQVCTNCGVRMGEYFCDICKFFDDDVGKQQFHCDDCGICRVGGRENYYHCQKCRSCYSIGLRDNHSCVEDSMKHHCPICYEYLFDSLKDTIVMKCGHTMHCECYQEMIRRDKFCCPICFKSVIDMSKTWKRIDEEIEATIMPEDYRNRKVWILCNDCNDTTEVYYHVIGQKCGHCSSYNTRSIAPPVFPRS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0285 327 Pfam Zinc finger, C3HC4 type (RING finger) 212 254 IPR018957 GO:0046872
Bisa01g0285 327 SUPERFAMILY CHY zinc finger-like 74 146 IPR037274 GO:0008270
Bisa01g0285 327 Gene3D - 286 321 - -
Bisa01g0285 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 285 IPR013083 -
Bisa01g0285 327 SUPERFAMILY Zinc hairpin stack 148 205 IPR037275 -
Bisa01g0285 327 MobiDBLite consensus disorder prediction 16 46 - -
Bisa01g0285 327 Pfam Zinc-ribbon 259 317 IPR039512 -
Bisa01g0285 327 SMART ring_2 212 254 IPR001841 -
Bisa01g0285 327 ProSiteProfiles Zinc finger CHY-type profile. 70 145 IPR008913 GO:0008270
Bisa01g0285 327 ProSiteProfiles Zinc finger CTCHY-type profile. 147 211 IPR017921 -
Bisa01g0285 327 SUPERFAMILY RING/U-box 211 258 - -
Bisa01g0285 327 FunFam RING finger and CHY zinc finger domain-containing protein 1 283 324 - -
Bisa01g0285 327 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 62 322 - -
Bisa01g0285 327 Pfam CHY zinc finger 77 157 IPR008913 GO:0008270
Bisa01g0285 327 ProSiteProfiles Zinc finger RING-type profile. 212 254 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0285 Bisa-ChrBisa01 3800728 3817696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0285 17 325 C2H2 Transcription Factor Family AT3G18290 35.692 2.04e-55 192